miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;EU616812.1/2503-2581 10090:Mus musculus (house
mouse)
Length = 79
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 acttggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctct 63
Query: 61 cctctcttctagt 73
|||||||||||||
Sbjct: 64 cctctcttctagt 76
>RF00641;mir-154;ABRQ01054376.1/2766-2844 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 113 bits (57), Expect = 3e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctct 60
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 4 acttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 63
Query: 61 cctctcttctagt 73
|||||||| ||||
Sbjct: 64 cctctcttttagt 76
>RF00641;mir-154;AADA01084967.1/16706-16786 9598:Pan troglodytes
(chimpanzee)
Length = 81
Score = 79.8 bits (40), Expect = 4e-15
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatctaa-acgagtcatacacggctc 59
||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||
Sbjct: 4 acttggagagaggctggccgtgatgaattcgattcgtcaaagtcgagtcatactcggctc 63
Query: 60 tcct 63
||||
Sbjct: 64 tcct 67
>RF00641;mir-154;AAGW01206555.1/4060-4141 9986:Oryctolagus
cuniculus (rabbit)
Length = 82
Score = 77.8 bits (39), Expect = 2e-14
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 5 ggagagaggctggc-cgtgatgaatt-cgattcatctaaacgagtcatacacggctctcc 62
|||||||||||||| | || |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 9 ggagagaggctggctcatggtgaatttcgattcatcaaagcgagtcatacacggctctcc 68
Query: 63 tctcttctagt 73
|||||||||||
Sbjct: 69 tctcttctagt 79
>RF00641;mir-154;AANN01387448.1/1462-1384 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 4 tggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctctcct 63
|||||||||| |||||||||||||||||| | || || |||||||||| ||||||||||
Sbjct: 7 tggagagaggacggccgtgatgaattcgatccctcaaagcgagtcatacgcggctctcct 66
Query: 64 ctctt 68
|||||
Sbjct: 67 ctctt 71
>RF00641;mir-154;AAKN02051949.1/123833-123911 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctct 60
|||||||||| ||||||| ||||| | || ||| |||| || || |||||||||||| |
Sbjct: 4 acttggagaggggctggctgtgatcagtttgatccatcaaagtgactcatacacggctgt 63
Query: 61 cctctct 67
|||||||
Sbjct: 64 cctctct 70
>RF00641;mir-154;AAQQ01350203.1/713-790 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 17 gccgtgatgaattcgattcatctaaacgagtcatacacggctctcctctcttctagt 73
|||| |||||||||| |||||| || ||||| |||| | |||||||||||| ||||
Sbjct: 19 gccgcgatgaattcggttcatccaagtgagtcctacatgactctcctctcttttagt 75
