miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32567_mmu-mir-3107:mirbase
Length = 90
Score = 178 bits (90), Expect = 6e-46
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 19 ccctccctgaggggtcctgtactgagctgccccgaggtccttcactgtgctcagctcggg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ccctccctgaggggtcctgtactgagctgccccgaggtccttcactgtgctcagctcggg 31
Query: 79 gcagctcagtacaggatgcgtcagggtggg 108
||||||||||||||||||||||||||||||
Sbjct: 30 gcagctcagtacaggatgcgtcagggtggg 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 15 tcctgtactgagctgccccgag 36
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ctcggggcagctcagtacagga 94
||||||||||||||||||||||
Sbjct: 55 ctcggggcagctcagtacagga 76
>27190_eca-mir-486:mirbase
Length = 66
Score = 109 bits (55), Expect = 5e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtacag 63
Query: 93 gat 95
|||
Sbjct: 64 gat 66
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggat 95
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>27191_eca-mir-486:mirbase
Length = 66
Score = 109 bits (55), Expect = 5e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtacag 63
Query: 93 gat 95
|||
Sbjct: 64 gat 66
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggat 95
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>33391_bta-mir-486:mirbase
Length = 124
Score = 109 bits (55), Expect = 5e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 20 cctccctgaggggtcctgtactgagctgccccgaggtccttcactgtgctcagctcgggg 79
||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 19 cctccctgacgggtcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggt 78
Query: 80 cagctcagtacaggatgcgtcagggtgggag 110
||||||||||| || ||||| |||||||||
Sbjct: 79 cagctcagtaccgggcgcgtcggggtgggag 109
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgcgtcaggg 104
|||||||||||||||||||||| ||||||||
Sbjct: 53 ctcggggcagctcagtacaggacccgtcaggg 22
>34106_ssc-mir-486-2:mirbase
Length = 82
Score = 87.7 bits (44), Expect = 2e-18
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 23 ccctgaggggtcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcag 82
|||||| |||||||||||||||||||||||||| || ||||||||| ||||||||| |||
Sbjct: 1 ccctgacgggtcctgtactgagctgccccgagg-ccctcactgtgcccagctcgggccag 59
Query: 83 ctcagtac 90
||||||||
Sbjct: 60 ctcagtac 67
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgcgtcaggg 104
|||||||||||||||||||||| ||||||||
Sbjct: 32 ctcggggcagctcagtacaggacccgtcaggg 1
>27922_mml-mir-486:mirbase
Length = 68
Score = 85.7 bits (43), Expect = 7e-18
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 6
Query: 93 gat 95
|||
Sbjct: 5 gat 3
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 ctcggggcagctcagtacaggatgc 97
|||||||||||||||||||||||||
Sbjct: 44 ctcggggcagctcagtacaggatgc 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgag 25
>27923_mml-mir-486:mirbase
Length = 68
Score = 85.7 bits (43), Expect = 7e-18
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 6
Query: 93 gat 95
|||
Sbjct: 5 gat 3
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 ctcggggcagctcagtacaggatgc 97
|||||||||||||||||||||||||
Sbjct: 44 ctcggggcagctcagtacaggatgc 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgag 25
>28673_hsa-mir-486:mirbase
Length = 68
Score = 85.7 bits (43), Expect = 7e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
Query: 93 gat 95
|||
Sbjct: 64 gat 66
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgc 97
|||||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggatgc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>28674_hsa-mir-486:mirbase
Length = 68
Score = 85.7 bits (43), Expect = 7e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
Query: 93 gat 95
|||
Sbjct: 64 gat 66
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgc 97
|||||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggatgc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>30389_ptr-mir-486:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 7e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
Query: 93 gat 95
|||
Sbjct: 64 gat 66
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgc 97
|||||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggatgc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>31022_ppy-mir-486:mirbase
Length = 68
Score = 85.7 bits (43), Expect = 7e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
Query: 93 gat 95
|||
Sbjct: 64 gat 66
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgc 97
|||||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggatgc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>34105_ssc-mir-486-1:mirbase
Length = 80
Score = 65.9 bits (33), Expect = 7e-12
Identities = 46/49 (93%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 20 cctccctgaggggtcctgtactgagctgccccgaggtccttcactgtgc 68
||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct: 33 cctccctgacgggtcctgtactgagctgccccgagg-ccctcactgtgc 80
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgcgtcaggg 104
|||||||||||||||||||||| ||||||||
Sbjct: 67 ctcggggcagctcagtacaggacccgtcaggg 36
