miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00784;mir-486;ABRQ01339403.1/10021-10088 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 105 bits (53), Expect = 1e-22
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggccctgcactgtgcccagctcggggcagctcagtacag 63
Query: 93 gatgc 97
|||||
Sbjct: 64 gatgc 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggat 95
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>RF00784;mir-486;ABRN01443338.1/12785-12852 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 68
Score = 89.7 bits (45), Expect = 8e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 30 gggtcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagta 89
|||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||
Sbjct: 1 gggtcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggccagctcagta 60
Query: 90 c 90
|
Sbjct: 61 c 61
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacagga 94
||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacagga 4
>RF00784;mir-486;AAPE01263359.1/646-579 59463:Myotis lucifugus
(little brown bat)
Length = 68
Score = 81.8 bits (41), Expect = 2e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
|||||||||||||||||||||||| ||||| || | | |||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggttcttcattgcacccggctcggggcagctcagtacag 63
Query: 93 gatgc 97
|||||
Sbjct: 64 gatgc 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggat 95
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tcctgtactgagctgccccgag 54
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>RF00784;mir-486;AAYZ01062575.1/1218-1151 9978:Ochotona princeps
(American pika)
Length = 68
Score = 81.8 bits (41), Expect = 2e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
|||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 4 tcctgtactgagctgccctgaggtccttgcttgtgcccagctcggggcagcttagtacag 63
Query: 93 gatgc 97
|||||
Sbjct: 64 gatgc 68
>RF00784;mir-486;AADA01053888.1/632-565 9598:Pan troglodytes
(chimpanzee)
Length = 68
Score = 77.8 bits (39), Expect = 3e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagcttggggcagctcagtacag 63
Query: 93 gat 95
|||
Sbjct: 64 gat 66
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggatgc 97
|||||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggatgc 1
>RF00784;mir-486;ABRT010741278.1/1111-1044 9478:Tarsius syrichta
(Philippine tarsier)
Length = 68
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagt 88
||||||||||||||||||||||| || ||| ||||| | |||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccgtcattgtgccccgctcggggcagctcagt 59
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggat 95
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
>RF00784;mir-486;AALT01613538.1/133-200 42254:Sorex araneus
(European shrew)
Length = 68
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
||||||||||||||||||||||| |||| ||||| | || |||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggccctttcttgtgccccactaggggcagctcagtacag 63
Query: 93 gatgc 97
|||||
Sbjct: 64 gatgc 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacaggat 95
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
>RF00784;mir-486;ABDC01344599.1/5816-5751 30608:Microcebus murinus
(gray mouse lemur)
Length = 66
Score = 58.0 bits (29), Expect = 3e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 30 gggtcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagta 89
|||||||||||||||||||||||||| ||| | ||| | ||||||||||||||||||
Sbjct: 1 gggtcctgtactgagctgccccgaggccctgta--ttgccccgctcggggcagctcagta 58
Query: 90 cagg 93
||||
Sbjct: 59 cagg 62
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 73 ctcggggcagctcagtacagga 94
||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacagga 4
>RF00784;mir-486;ABRO01243683.1/2112-2179 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 68
Score = 58.0 bits (29), Expect = 3e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
|||||||||||||||||| |||| |||| |||| || ||||||||| ||||||||||
Sbjct: 4 tcctgtactgagctgccctgaggctcttctttgtgtccaactcggggcaactcagtacag 63
Query: 93 gatgc 97
|||||
Sbjct: 64 gatgc 68
