miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32931_rno-mir-487b:mirbase
Length = 82
Score = 155 bits (78), Expect = 6e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcacttatgccgaatcgtacagg 60
Query: 61 gtcatccactttttcagtatca 82
||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>33393_bta-mir-487b:mirbase
Length = 84
Score = 131 bits (66), Expect = 8e-32
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||
Sbjct: 2 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 61
Query: 61 gtcatccactttttcagtatca 82
||||||||||||||||||||||
Sbjct: 62 gtcatccactttttcagtatca 83
>28676_hsa-mir-487b:mirbase
Length = 84
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||
Sbjct: 2 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 61
Query: 61 gtcatccactttttcagtatca 82
||||||||||||||||||||||
Sbjct: 62 gtcatccactttttcagtatca 83
>30391_ptr-mir-487b:mirbase
Length = 83
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 60
Query: 61 gtcatccactttttcagtatca 82
||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>31024_ppy-mir-487b:mirbase
Length = 84
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||
Sbjct: 2 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 61
Query: 61 gtcatccactttttcagtatca 82
||||||||||||||||||||||
Sbjct: 62 gtcatccactttttcagtatca 83
>34107_ssc-mir-487b:mirbase
Length = 78
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 4 tacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagggtc 63
||||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||||
Sbjct: 1 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 60
Query: 64 atccactttttcagtatc 81
||||||||||||||||||
Sbjct: 61 atccactttttcagtatc 78
>27925_mml-mir-487b:mirbase
Length = 84
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || ||| || |||||||||||||
Sbjct: 2 tggtacttggagagtggttatccctgtcctgttcgttttgctcgtgtcgaatcgtacagg 61
Query: 61 gtcatccactttttcagtatca 82
||||||||||||||||||||||
Sbjct: 62 gtcatccactttttcagtatca 83
>33854_oar-mir-487b:mirbase
Length = 106
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||
Sbjct: 11 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 70
Query: 61 gtcatccactttttcagtatca 82
||||||||| ||||||||||||
Sbjct: 71 gtcatccac-ttttcagtatca 91
>33855_oar-mir-487b:mirbase
Length = 106
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||
Sbjct: 11 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 70
Query: 61 gtcatccactttttcagtatca 82
||||||||| ||||||||||||
Sbjct: 71 gtcatccac-ttttcagtatca 91
>27193_eca-mir-487b:mirbase
Length = 84
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
|||||||||||||||||||||||||||||| |||| || | | | | |||||||||||||
Sbjct: 2 tggtacttggagagtggttatccctgtcctgttcgttttaattacgtcgaatcgtacagg 61
Query: 61 gtcatccactttttcagtatca 82
||||||||||||||||||||||
Sbjct: 62 gtcatccactttttcagtatca 83
>26857_cfa-mir-487b:mirbase
Length = 58
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 14 gtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagggtcatccactt 71
||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||
Sbjct: 1 gtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtcatccactt 58
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 2 ggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacaggg 61
|||||||| |||||||||||||||| | ||||||| | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 62 tcatccactttttcagtatc 81
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 2 ggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacaggg 61
|||||||| |||||||||||||||| | ||||||| | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 62 tcatccactttttcagtatc 81
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 2 ggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacaggg 61
|||||||| |||||||||||||||| | |||||| | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 62 tcatccactttttcagtatc 81
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27192_eca-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 2 ggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacaggg 61
|||||||| |||||||||||||||| | |||||| | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 62 tcatccactttttcagtatc 81
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27924_mml-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 2 ggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacaggg 61
||||||||||||||||| ||||||| | ||||||| | ||| |||||| |||||||
Sbjct: 1 ggtacttggagagtggtcatccctgctgtgttcgctttgtttatgacgaatcatacaggg 60
Query: 62 tcatccactttttcagtatc 81
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33392_bta-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 2 ggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacaggg 61
|||||||| |||||||||||||||| | |||||| | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 62 tcatccactttttcagtatc 81
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 3 gtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagggt 62
||||||| |||||||||||||||| | |||||| | | ||| |||||| |||||||
Sbjct: 1 gtacttgaagagtggttatccctgctgtgttcgctgaatttatgacgaatcatacaggga 60
Query: 63 catccactttttcagtatc 81
|||||| ||||||||||||
Sbjct: 61 catccagtttttcagtatc 79
>33852_oar-mir-487a:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
||||||||| ||||||| |||||||| | |||||| | | ||| |||||| ||||||
Sbjct: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacagg 69
Query: 61 gtcatccactttttcagtatca 82
| |||||| |||||||||||||
Sbjct: 70 gacatccagtttttcagtatca 91
>33853_oar-mir-487a:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
||||||||| ||||||| |||||||| | |||||| | | ||| |||||| ||||||
Sbjct: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacagg 69
Query: 61 gtcatccactttttcagtatca 82
| |||||| |||||||||||||
Sbjct: 70 gacatccagtttttcagtatca 91
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 catccactttttcagtatca 82
||||||||||||||||||||
Sbjct: 63 catccactttttcagtatca 82
>32890_rno-mir-376b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 catccactttttcagtatca 82
||||||||||||||||||||
Sbjct: 65 catccactttttcagtatca 84
>32891_rno-mir-376b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 catccactttttcagtatca 82
||||||||||||||||||||
Sbjct: 65 catccactttttcagtatca 84
