miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32180_mmu-mir-490:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>32934_rno-mir-490:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>33396_bta-mir-490:mirbase
Length = 127
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacacca 76
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 77 acctggaggactccatgctgttga 100
>26860_cfa-mir-490:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 4 aaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacaccaacc 63
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 aaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacaccaacc 60
Query: 64 tggaggactccatgctgttga 84
|||||||||||||||||||||
Sbjct: 61 tggaggactccatgctgttga 81
>27928_mml-mir-490:mirbase
Length = 128
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>27929_mml-mir-490:mirbase
Length = 128
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>28679_hsa-mir-490:mirbase
Length = 128
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>28680_hsa-mir-490:mirbase
Length = 128
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>30394_ptr-mir-490:mirbase
Length = 127
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 17 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 76
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 77 acctggaggactccatgctgttga 100
>31027_ppy-mir-490:mirbase
Length = 128
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>31028_ppy-mir-490:mirbase
Length = 128
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>27196_eca-mir-490:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 16 tcgacaccatggatctccaggtgggtcacgtttagatatacaccaacctggaggactcca 75
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
Query: 76 tgctgttga 84
|||||||||
Sbjct: 61 tgctgttga 69
>27197_eca-mir-490:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 16 tcgacaccatggatctccaggtgggtcacgtttagatatacaccaacctggaggactcca 75
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
Query: 76 tgctgttga 84
|||||||||
Sbjct: 61 tgctgttga 69
>34108_ssc-mir-490:mirbase
Length = 79
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 12 ttgttcgacaccatggatctccaggtgggtcacgtttagatatacaccaacctggaggac 71
||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 ttgttcgacaccatggatccccaggtgggtcacgtttcaagatacaccaacctggaggac 60
Query: 72 tccatgctgttga 84
|||||||||||||
Sbjct: 61 tccatgctgttga 73
>26041_gga-mir-490:mirbase
Length = 93
Score = 109 bits (55), Expect = 3e-25
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 5 aagttcattgttcgacaccatggatctccaggtgggtcacg--tttagatatacaccaac 62
|||||||| |||||||||||||||||||||||||||||| | | |||| ||||||||||
Sbjct: 1 aagttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacaccaac 60
Query: 63 ctggaggactccatgctgttga 84
||||||||||||||||||||||
Sbjct: 61 ctggaggactccatgctgttga 82
>31560_oan-mir-490:mirbase
Length = 124
Score = 97.6 bits (49), Expect = 1e-21
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||| ||||||| |||||||||||||||||||||| | ||||| | |||||
Sbjct: 9 tggaaagttcacggttcgacgccatggatctccaggtgggtcaaggttagagacgcacca 68
Query: 61 acctggaggactccatgctgt 81
|||||||||||||||||||||
Sbjct: 69 acctggaggactccatgctgt 89
>26540_tgu-mir-490-1:mirbase
Length = 93
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 agttcattgttcgacaccatggatctccaggtgggtcacgtt--tagatatacaccaacc 63
||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
Query: 64 tggaggactccatgctgt 81
||||||||||||||||||
Sbjct: 66 tggaggactccatgctgt 83
>26541_tgu-mir-490-2:mirbase
Length = 93
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 agttcattgttcgacaccatggatctccaggtgggtcacg--tttagatatacaccaacc 63
||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
Query: 64 tggaggactccatgctgt 81
||||||||||||||||||
Sbjct: 66 tggaggactccatgctgt 83
