miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00792;mir-490;AC113246.15/27115-26988 10090:Mus musculus (house
mouse)
Length = 128
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>RF00792;mir-490;AANN01372443.1/381-254 9365:Erinaceus europaeus
(western European hedgehog)
Length = 128
Score = 145 bits (73), Expect = 1e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 4 aaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacaccaacc 63
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 21 aaagttcattgttcgacaccatggatctccaggtgggtcacgttttgagatacaccaacc 80
Query: 64 tggaggactccatgctgttga 84
|||||||||||||||||||||
Sbjct: 81 tggaggactccatgctgttga 101
>RF00792;mir-490;AAYZ01127575.1/844-971 9978:Ochotona princeps
(American pika)
Length = 128
Score = 139 bits (70), Expect = 6e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 7 gttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacaccaacctgg 66
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 24 gttcattgttcggcaccatggatctccaggtgggtcacgtttagagatacaccaacctgg 83
Query: 67 aggactccatgctgttga 84
||||||||||||||||||
Sbjct: 84 aggactccatgctgttga 101
>RF00792;mir-490;AAKN02015558.1/78118-77991 10141:Cavia porcellus
(domestic guinea pig)
Length = 128
Score = 137 bits (69), Expect = 2e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 18 tggaaagttcattgttcggcaccatggatctccaggtgggtcacggttagaaatacacca 77
Query: 61 acctggaggactccatgctgt 81
|||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgt 98
>RF00792;mir-490;AAQQ01772082.1/825-951 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 127
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 5 aagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacaccaacct 64
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 21 aagttcattgttcgacaccatggatctccaggtgggtcacgtttagaggttaaccaacct 80
Query: 65 ggaggactccatgctgttga 84
||||||||||||||||||||
Sbjct: 81 ggaggactccatgctgttga 100
>RF00792;mir-490;ABRQ01197453.1/2148-2275 9813:Procavia capensis
(cape rock hyrax)
Length = 128
Score = 111 bits (56), Expect = 1e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
|||||| | ||| |||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct: 18 tggaaattacatggttcgacaccatggatctccaggtgggtcacggttacaggtacacca 77
Query: 61 acctggaggactccatgctgttga 84
||||||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgttga 101
>RF00792;mir-490;AADN02006399.1/20529-20400 9031:Gallus gallus
(chicken)
Length = 130
Score = 109 bits (55), Expect = 6e-24
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 5 aagttcattgttcgacaccatggatctccaggtgggtcacg--tttagatatacaccaac 62
|||||||| |||||||||||||||||||||||||||||| | | |||| ||||||||||
Sbjct: 22 aagttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacaccaac 81
Query: 63 ctggaggactccatgctgttga 84
||||||||||||||||||||||
Sbjct: 82 ctggaggactccatgctgttga 103
>RF00792;mir-490;ABQO010519113.1/1706-1579 9315:Macropus eugenii
(tammar wallaby)
Length = 128
Score = 99.6 bits (50), Expect = 5e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 3 gaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacaccaac 62
|||||||||| |||||||||||||||||||||||| ||||| | ||||| || ||||||
Sbjct: 20 gaaagttcatggttcgacaccatggatctccaggtaggtcaaggttagaaatgtaccaac 79
Query: 63 ctggaggactccatgctgttga 84
|||||| |||||||||||||||
Sbjct: 80 ctggagtactccatgctgttga 101
>RF00792;mir-490;AAPN01246488.1/31456-31583 9258:Ornithorhynchus
anatinus (platypus)
Length = 128
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
||||||||||| ||||||| |||||||||||||||||||||| | ||||| | |||||
Sbjct: 18 tggaaagttcacggttcgacgccatggatctccaggtgggtcaaggttagagacgcacca 77
Query: 61 acctggaggactccatgctgt 81
|||||||||||||||||||||
Sbjct: 78 acctggaggactccatgctgt 98
>RF00792;mir-490;AAWZ01012016.1/49356-49227 28377:Anolis
carolinensis (green anole)
Length = 130
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 19 acaccatggatctccaggtgggtcacgttta--gatatacaccaacctggaggactccat 76
||||||||||||||||||||||||| | ||| || | ||||||||||||||||||||||
Sbjct: 36 acaccatggatctccaggtgggtcaagattatagagaaacaccaacctggaggactccat 95
Query: 77 gctgttga 84
||||||||
Sbjct: 96 gctgttga 103
>RF00792;mir-490;AAFR03031771.1/89803-89676 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 128
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 23 catggatctccaggtgggtcacgtttagatatacaccaacctggaggactccatgctgtt 82
|||||||||| ||||||||| |||||| ||| ||||||||||||||||||| ||||||
Sbjct: 40 catggatctcttggtgggtcaagtttaggaatataccaacctggaggactccaagctgtt 99
Query: 83 ga 84
||
Sbjct: 100 ga 101
>RF00792;mir-490;ABRP01133569.1/2630-2749 132908:Pteropus vampyrus
(large flying fox)
Length = 120
Score = 60.0 bits (30), Expect = 5e-09
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 36 gtgggtcacgtttagatatacaccaacctggaggactccatgctgt 81
||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 47 gtgggtcacgttt-gagatacaccaacctggaggactgcatgctgt 91
