miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00862;mir-491;CR937052.2/62844-62927 10116:Rattus norvegicus
(Norway rat)
Length = 84
Score = 119 bits (60), Expect = 6e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 3 ttgacttagctgggaagtggggaacccttccatgaggagtagaacactccttatgcaaga 62
||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||
Sbjct: 1 ttgacttagctgggaagtggggaacacttccgtgaggagtagagcactccttatgccaga 60
Query: 63 ttcccttctacctgactgagttga 86
|||||||||||||| ||| |||||
Sbjct: 61 ttcccttctacctggctgggttga 84
>RF00862;mir-491;AAKN02025646.1/25933-25850 10141:Cavia porcellus
(domestic guinea pig)
Length = 84
Score = 117 bits (59), Expect = 2e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 3 ttgacttagctgggaagtggggaacccttccatgaggagtagaacactccttatgcaaga 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ttgacttagctgggcagtggggaacccttccatgaggagtagaacactccttatgtaaga 60
Query: 63 ttcccttctacctgactgagttg 85
||||| ||| |||| ||| ||||
Sbjct: 61 ttcccctctgcctggctgggttg 83
>RF00862;mir-491;ABRO01065492.1/742-825 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 107 bits (54), Expect = 2e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 4 tgacttagctgggaagtggggaacccttccatgaggagtagaacactccttatgcaagat 63
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 2 tgacttagctggatggtggggaacccttccatgaggagaataacactccttatgcaagat 61
Query: 64 tcccttctacctgactgagttg 85
||||||| ||||||||| ||||
Sbjct: 62 tcccttccacctgactgggttg 83
>RF00862;mir-491;ABRQ01242560.1/797-877 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 89.7 bits (45), Expect = 5e-18
Identities = 72/77 (93%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 4 tgacttagctgggaagtggggaacccttccatgaggagtagaacactccttatgcaagat 63
||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 2 tgacttagctgggtagtggggaa-ccttccatgaggagtcgaacact-cttatgcaagat 59
Query: 64 tcccttctacctgactg 80
| |||||||||||||||
Sbjct: 60 t-ccttctacctgactg 75
