miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32935_rno-mir-493:mirbase
Length = 84
Score = 135 bits (68), Expect = 5e-33
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcattttttgcacattcggtgaaggtcctac 62
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 6 ccagggccttgtacatggtaggctttcattcattgtttgcacattcggtgaaggt-ctac 64
Query: 63 tgtgtgccaggccctgtgcc 82
||||||||||||||||||||
Sbjct: 65 tgtgtgccaggccctgtgcc 84
>33398_bta-mir-493:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 79/82 (96%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 8 ccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-cta 66
Query: 62 ctgtgtgccaggccctgtgcca 83
||||||||||||||||||||||
Sbjct: 67 ctgtgtgccaggccctgtgcca 88
>33856_oar-mir-493:mirbase
Length = 115
Score = 123 bits (62), Expect = 2e-29
Identities = 79/82 (96%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 18 ccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-cta 76
Query: 62 ctgtgtgccaggccctgtgcca 83
||||||||||||||||||||||
Sbjct: 77 ctgtgtgccaggccctgtgcca 98
>33857_oar-mir-493:mirbase
Length = 115
Score = 123 bits (62), Expect = 2e-29
Identities = 79/82 (96%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 18 ccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-cta 76
Query: 62 ctgtgtgccaggccctgtgcca 83
||||||||||||||||||||||
Sbjct: 77 ctgtgtgccaggccctgtgcca 98
>27933_mml-mir-493:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 8 ccagggctttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-cta 66
Query: 62 ctgtgtgccaggccctgtgcca 83
||||||||||||||||||||||
Sbjct: 67 ctgtgtgccaggccctgtgcca 88
>28684_hsa-mir-493:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 8 ccagggctttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-cta 66
Query: 62 ctgtgtgccaggccctgtgcca 83
||||||||||||||||||||||
Sbjct: 67 ctgtgtgccaggccctgtgcca 88
>31032_ppy-mir-493:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 8 ccagggctttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-cta 66
Query: 62 ctgtgtgccaggccctgtgcca 83
||||||||||||||||||||||
Sbjct: 67 ctgtgtgccaggccctgtgcca 88
>27203_eca-mir-493b:mirbase
Length = 89
Score = 99.6 bits (50), Expect = 3e-22
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 8 ccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-ctt 66
Query: 62 ctgtgtgccaggccctgtgcca 83
| ||||||||||| ||||||||
Sbjct: 67 ccgtgtgccaggctctgtgcca 88
>26862_cfa-mir-493:mirbase
Length = 61
Score = 83.8 bits (42), Expect = 2e-17
Identities = 59/62 (95%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 12 tgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtcctactgtgtgcc 70
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 1 tgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-ctactgtgtgcc 59
Query: 71 ag 72
||
Sbjct: 60 ag 61
