miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32936_rno-mir-494:mirbase
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 2 tgatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacac 60
Query: 62 gggaaacctcttttttagtatca 84
|||||||||||||||||||||||
Sbjct: 61 gggaaacctcttttttagtatca 83
>33399_bta-mir-494:mirbase
Length = 85
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
Query: 63 ggaaacctcttttttagtatcaa 85
|||||||||||||||||||||||
Sbjct: 63 ggaaacctcttttttagtatcaa 85
>26863_cfa-mir-494:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>27204_eca-mir-494:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>28685_hsa-mir-494:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>31033_ppy-mir-494:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>30397_ptr-mir-494:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 4 atacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgg 60
Query: 64 gaaacctcttttttagtatc 83
||||||||||||||||||||
Sbjct: 61 gaaacctcttttttagtatc 80
>33858_oar-mir-494:mirbase
Length = 98
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
Query: 63 ggaaacctcttttttagtatcaa 85
|||||||||||||||||||||||
Sbjct: 68 ggaaacctcttttttagtatcaa 90
>33859_oar-mir-494:mirbase
Length = 98
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
Query: 63 ggaaacctcttttttagtatcaa 85
|||||||||||||||||||||||
Sbjct: 68 ggaaacctcttttttagtatcaa 90
>27934_mml-mir-494:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
||||||||||| |||||||||
Sbjct: 61 ggaaacctcttctttagtatc 81
>34110_ssc-mir-494:mirbase
Length = 75
Score = 107 bits (54), Expect = 1e-24
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 10 gaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgggaaacc 69
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4 gaaggagaggttgtc-gtgttgtcttctctttacttatgatgaaacatacacgggaaacc 62
Query: 70 tctttt 75
||||||
Sbjct: 63 tctttt 68
>27989_mml-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 ctttatttatgatgaaacataca 60
|||||||||||||||| ||||||
Sbjct: 34 ctttatttatgatgaatcataca 56
>28787_hsa-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 ctttatttatgatgaaacataca 60
|||||||||||||||| ||||||
Sbjct: 34 ctttatttatgatgaatcataca 56
>30466_ptr-mir-539:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 ctttatttatgatgaaacataca 60
|||||||||||||||| ||||||
Sbjct: 33 ctttatttatgatgaatcataca 55
>31126_ppy-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 ctttatttatgatgaaacataca 60
|||||||||||||||| ||||||
Sbjct: 34 ctttatttatgatgaatcataca 56
