miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32937_rno-mir-495:mirbase
Length = 80
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 67
Query: 61 ctt 63
|||
Sbjct: 68 ctt 70
>27935_mml-mir-495:mirbase
Length = 82
Score = 85.7 bits (43), Expect = 3e-18
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 11 aaagaagttgcccatgttatttt-cgcttt-atatgtgacgaaacaaacatggtgcactt 68
Query: 61 ctt 63
|||
Sbjct: 69 ctt 71
>28686_hsa-mir-495:mirbase
Length = 82
Score = 85.7 bits (43), Expect = 3e-18
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 11 aaagaagttgcccatgttatttt-cgcttt-atatgtgacgaaacaaacatggtgcactt 68
Query: 61 ctt 63
|||
Sbjct: 69 ctt 71
>30398_ptr-mir-495:mirbase
Length = 81
Score = 85.7 bits (43), Expect = 3e-18
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 10 aaagaagttgcccatgttatttt-cgcttt-atatgtgacgaaacaaacatggtgcactt 67
Query: 61 ctt 63
|||
Sbjct: 68 ctt 70
>31034_ppy-mir-495:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 3e-18
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 8 aaagaagttgcccatgttatttt-cgcttt-atatgtgacgaaacaaacatggtgcactt 65
Query: 61 ctt 63
|||
Sbjct: 66 ctt 68
>27205_eca-mir-495:mirbase
Length = 82
Score = 77.8 bits (39), Expect = 8e-16
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 11 aaagaagttgcccatgttatttt-cgcttg-atatgtgacgaaacaaacatggtgcactt 68
Query: 61 ctt 63
|||
Sbjct: 69 ctt 71
>33400_bta-mir-495:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
|||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||
Sbjct: 11 aaagaagttgcccatgttctttt-cgctgatat--gtgacgaaacaaacatggtgcactt 67
Query: 61 ctt 63
|||
Sbjct: 68 ctt 70
>33860_oar-mir-495:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 2e-10
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 2 aagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttc 61
||||||| ||||||||| |||| ||||| ||||||| ||||||||||||||||||||||
Sbjct: 41 aagaagtcgcccatgttctttt-cgcttg-atttgtgtcgaaacaaacatggtgcacttc 98
Query: 62 tt 63
||
Sbjct: 99 tt 100
>33861_oar-mir-495:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 2e-10
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 2 aagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttc 61
||||||| ||||||||| |||| ||||| ||||||| ||||||||||||||||||||||
Sbjct: 41 aagaagtcgcccatgttctttt-cgcttg-atttgtgtcgaaacaaacatggtgcacttc 98
Query: 62 tt 63
||
Sbjct: 99 tt 100
>27229_eca-mir-543:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 3 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 62
||||||||||| |||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 8 agaagttgcccgtgtt-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttct 65
Query: 63 t 63
|
Sbjct: 66 t 66
>28791_hsa-mir-543:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 3 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 62
||||||||||| |||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 10 agaagttgcccgtgtt-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttct 67
Query: 63 t 63
|
Sbjct: 68 t 68
>30467_ptr-mir-543:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 3 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 62
||||||||||| |||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 9 agaagttgcccgtgtt-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttct 66
Query: 63 t 63
|
Sbjct: 67 t 67
>31130_ppy-mir-543:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 3 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 62
||||||||||| |||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 10 agaagttgcccgtgtt-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttct 67
Query: 63 t 63
|
Sbjct: 68 t 68
>26864_cfa-mir-495:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 cgaaacaaacatggtgcacttctt 63
||||||||||||||||||||||||
Sbjct: 35 cgaaacaaacatggtgcacttctt 58
>26877_cfa-mir-543:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 7e-07
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 4 gaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttctt 63
|||||||||| |||| ||||||||||| ||||||||||||||| | ||||||||||||
Sbjct: 1 gaagttgcccgtgtt-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttctt 58
>27993_mml-mir-543:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 4e-05
Identities = 53/61 (86%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 3 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 62
||||||||||| ||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 12 agaagttgcccgtgtc-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttct 69
Query: 63 t 63
|
Sbjct: 70 t 70
