miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 85.7 bits (43), Expect = 6e-17
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 9 aaagaagttgcccatgttatttt-cgcttt-atatgtgacgaaacaaacatggtgcactt 66
Query: 61 ctt 63
|||
Sbjct: 67 ctt 69
>RF00641;mir-154;AAFC03086346.1/3792-3714 9913:Bos taurus (cattle)
Length = 79
Score = 63.9 bits (32), Expect = 2e-10
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 aaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcactt 60
|||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||
Sbjct: 10 aaagaagttgcccatgttctttt-cgctgatat--gtgacgaaacaaacatggtgcactt 66
Query: 61 ctt 63
|||
Sbjct: 67 ctt 69
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 63.9 bits (32), Expect = 2e-10
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 4 gaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttctt 63
|||| ||||| ||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct: 13 gaagctgcccgtgttatttt-cgcttt-atgtgtgacgaaacaaacatggtgcacttctt 70
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 63.9 bits (32), Expect = 2e-10
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 4 gaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttctt 63
||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||
Sbjct: 13 gaagttgcccatgttctttt-cgcttt-atacgtgacgaaacaaacatggtgcacttctt 70
>RF00641;mir-154;AACN010421419.1/1043-964 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 2 aagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttc 61
|||||||||||| ||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct: 11 aagaagttgcccgtgttatttt-cgcttg-atacgtgccgaaacaaacatggtgcacttc 68
Query: 62 tt 63
||
Sbjct: 69 tt 70
>RF00641;mir-154;AAYZ01424897.1/1412-1491 9978:Ochotona princeps
(American pika)
Length = 80
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 35 tgtgacgaaacaaacatggtgcacttctt 63
|||| ||||||||||||||||||||||||
Sbjct: 42 tgtgccgaaacaaacatggtgcacttctt 70
