miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;CAAA01088157.1/5550-5472 10090:Mus musculus
(house mouse)
Length = 79
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 agtgttcgaatggaggttgcccatggtgtgttcattttatttatgatgagtattacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgttcgaatggaggttgcccatggtgtgttcattttatttatgatgagtattacatgg 60
Query: 61 ccaatctcctttcggcact 79
|||||||||||||||||||
Sbjct: 61 ccaatctcctttcggcact 79
>RF00641;mir-154;AAKN02051949.1/128730-128808 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 119 bits (60), Expect = 5e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 8 gaatggaggttgcccatggtgtgttcattttatttatgatgagtattacatggccaatct 67
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaatct 67
Query: 68 cctttcgg 75
| ||||||
Sbjct: 68 cttttcgg 75
>RF00641;mir-154;ABRQ01054377.1/2348-2427 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 85.7 bits (43), Expect = 7e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 8 gaatggaggttgcccatggtgtgttcatt-ttatttatgatgagtattacatggccaatc 66
|||||||||| | |||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 8 gaatggaggtagtccatggtgtgttcattcttattaatgatgattattacatggccaatc 67
Query: 67 tcctttc 73
|||||||
Sbjct: 68 tcctttc 74
>RF00641;mir-154;AANN01387447.1/1902-1824 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 60.0 bits (30), Expect = 4e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 12 ggaggttgcccatggtgtgttcattttatttatgatgagtattacatggccaatctcc 69
||||| || ||| |||||||||||||| || | ||||||||||||||||||| |||||
Sbjct: 12 ggaggctggccacggtgtgttcattttcttcacgatgagtattacatggccagtctcc 69
