miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32940_rno-mir-499:mirbase
Length = 65
Score = 121 bits (61), Expect = 8e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 10 gctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgt 69
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gctgttaagacttgcagtgatgtttagctcctctccatgtgaacatcacagcaagtctgt 60
Query: 70 gctgc 74
|||||
Sbjct: 61 gctgc 65
>27939_mml-mir-499:mirbase
Length = 121
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 23 gggcagctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 82
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 83 tctgtgctgct 93
>27940_mml-mir-499:mirbase
Length = 121
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 23 gggcagctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 82
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 83 tctgtgctgct 93
>30402_ptr-mir-499:mirbase
Length = 121
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 23 gggcagctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 82
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 83 tctgtgctgct 93
>27208_eca-mir-499:mirbase
Length = 123
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
|||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 25 gggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 84
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 85 tctgtgctgct 95
>27209_eca-mir-499:mirbase
Length = 123
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
|||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 25 gggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 84
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 85 tctgtgctgct 95
>28690_hsa-mir-499:mirbase
Length = 122
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
|||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 24 gggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 83
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 84 tctgtgctgct 94
>28691_hsa-mir-499:mirbase
Length = 122
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
|||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 24 gggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 83
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 84 tctgtgctgct 94
>28692_hsa-mir-499a:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Minus
Query: 10 gctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgt 69
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 69 gctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgt 10
Query: 70 gctgct 75
||||||
Sbjct: 9 gctgct 4
>28693_hsa-mir-499a:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Minus
Query: 10 gctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgt 69
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 69 gctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgt 10
Query: 70 gctgct 75
||||||
Sbjct: 9 gctgct 4
>31038_ppy-mir-499:mirbase
Length = 122
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgtgct 72
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 32 gttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 91
Query: 73 gct 75
|||
Sbjct: 92 gct 94
>31039_ppy-mir-499:mirbase
Length = 122
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgtgct 72
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 32 gttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 91
Query: 73 gct 75
|||
Sbjct: 92 gct 94
>33403_bta-mir-499:mirbase
Length = 103
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgtgct 72
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 13 gttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 72
Query: 73 gct 75
|||
Sbjct: 73 gct 75
>34112_ssc-mir-499:mirbase
Length = 80
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgtgct 72
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 14 gttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 73
Query: 73 gct 75
|||
Sbjct: 74 gct 76
>34113_ssc-mir-499:mirbase
Length = 80
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgtgct 72
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 14 gttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 73
Query: 73 gct 75
|||
Sbjct: 74 gct 76
>26867_cfa-mir-499:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 14 ttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgtgct 72
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 1 ttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 59
>31561_oan-mir-499:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||| ||||||||||| ||||||||||||||| ||| || ||||||||||| |||||
Sbjct: 10 gggcagcggttaagacttgtagtgatgtttagctcatctccacgtgaacatcactgcaag 69
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 70 tctgtgctgct 80
>27456_mdo-mir-499:mirbase
Length = 79
Score = 77.8 bits (39), Expect = 1e-15
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||
Sbjct: 5 gggcagctgttaagacttgcagtgatgtttaattcttctctatgtgaacatcacaacaag 64
Query: 65 tct 67
|||
Sbjct: 65 tct 67
>25865_xtr-mir-499:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgtttag 38
>34488_dre-mir-499:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||||||||||||||||
Sbjct: 16 gttaagacttgcagtgatgtttag 39
>26042_gga-mir-499:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||| ||||||||||||
Sbjct: 16 gttaagacttgtagtgatgtttag 39
