miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00745;mir-499;AAHY01022368.1/76934-77022 10090:Mus musculus
(house mouse)
Length = 89
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gggtgggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggtgggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacag 62
Query: 61 caagtctgtgctgctgcct 79
|||||||||||||||||||
Sbjct: 63 caagtctgtgctgctgcct 81
>RF00745;mir-499;ABRQ01106311.1/1341-1429 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 109 bits (55), Expect = 5e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 7 gggcagccgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 66
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 67 tctgtgctgct 77
>RF00745;mir-499;AAPN01135512.1/158-246 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||| ||||||||||| ||||||||||||||| ||| || ||||||||||| |||||
Sbjct: 7 gggcagcggttaagacttgtagtgatgtttagctcatctccacgtgaacatcactgcaag 66
Query: 65 tctgtgctgct 75
|||||||||||
Sbjct: 67 tctgtgctgct 77
>RF00745;mir-499;AALT01096934.1/620-533 42254:Sorex araneus
(European shrew)
Length = 88
Score = 93.7 bits (47), Expect = 3e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaagtctgtgct 72
||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgtttaactcctca-cacgtgaacatcacagcaagtctgtgct 73
Query: 73 gctgcct 79
|||||||
Sbjct: 74 gctgcct 80
>RF00745;mir-499;AAFR03012197.1/530-442 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||
Sbjct: 7 gggcagctgttaagacttgcagtgatgtttaattcttctctatgtgaacatcacaacaag 66
Query: 65 tct 67
|||
Sbjct: 67 tct 69
>RF00745;mir-499;AAIY01738857.1/91-1 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 91
Score = 69.9 bits (35), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 ttaagacttgcagtgatgtttag-ctcctctgcatgtgaacatcacagcaagtctgtgct 72
|||||||||||||||||||||| || || | || |||||||||||||||||||||||||
Sbjct: 17 ttaagacttgcagtgatgtttaaacttctgtccacgtgaacatcacagcaagtctgtgct 76
Query: 73 gct 75
|||
Sbjct: 77 gct 79
>RF00745;mir-499;AAWZ01003580.1/63985-64074 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgtttag 38
>RF00745;mir-499;CR555298.10/129727-129639 7955:Danio rerio
(zebrafish)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgtttag 38
>RF00745;mir-499;CR847953.10/25811-25900 7955:Danio rerio
(zebrafish)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgtttag 38
>RF00745;mir-499;AANH01006124.1/24032-23943 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgtttag 38
>RF00745;mir-499;BAAF04004562.1/510-599 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gttaagacttgcagtgatgtttag 36
||||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgtttag 38
