miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32941_rno-mir-500:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 11 ccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctggg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctggg 60
Query: 71 caagggttcagagaaggtga 90
||||||||||||||||||||
Sbjct: 61 caagggttcagagaaggtga 80
>27213_eca-mir-502:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 75/78 (96%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 tgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacc 66
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgc-tagtgctgtctcaatgcaatgcacc 59
Query: 67 tgggcaagggttcagaga 84
||||||||| ||||||||
Sbjct: 60 tgggcaaggattcagaga 77
>27214_eca-mir-502:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 75/78 (96%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 tgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacc 66
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgc-tagtgctgtctcaatgcaatgcacc 59
Query: 67 tgggcaagggttcagaga 84
||||||||| ||||||||
Sbjct: 60 tgggcaaggattcagaga 77
>31042_ppy-mir-502:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 75/78 (96%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 tgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacc 66
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgc-tagtgctgtctcaatgcaatgcacc 59
Query: 67 tgggcaagggttcagaga 84
||||||||| ||||||||
Sbjct: 60 tgggcaaggattcagaga 77
>31043_ppy-mir-502:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 75/78 (96%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 tgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacc 66
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgc-tagtgctgtctcaatgcaatgcacc 59
Query: 67 tgggcaagggttcagaga 84
||||||||| ||||||||
Sbjct: 60 tgggcaaggattcagaga 77
>28698_hsa-mir-502:mirbase
Length = 86
Score = 115 bits (58), Expect = 6e-27
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 tgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacc 66
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgc-tagtgctggctcaatgcaatgcacc 59
Query: 67 tgggcaagggttcagaga 84
||||||||| ||||||||
Sbjct: 60 tgggcaaggattcagaga 77
>28699_hsa-mir-502:mirbase
Length = 86
Score = 115 bits (58), Expect = 6e-27
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 tgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacc 66
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgc-tagtgctggctcaatgcaatgcacc 59
Query: 67 tgggcaagggttcagaga 84
||||||||| ||||||||
Sbjct: 60 tgggcaaggattcagaga 77
>30406_ptr-mir-502:mirbase
Length = 85
Score = 113 bits (57), Expect = 2e-26
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctatctgggtgc-tagtgctggctcaatgcaatgcacct 59
Query: 68 gggcaagggttcagaga 84
|||||||| ||||||||
Sbjct: 60 gggcaaggattcagaga 76
>27943_mml-mir-502:mirbase
Length = 80
Score = 111 bits (56), Expect = 9e-26
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 ccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggca 72
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgct-agtgctgtctcaatgcaatgcacctgggca 59
Query: 73 agggttcagaga 84
||| ||||||||
Sbjct: 60 aggattcagaga 71
>27944_mml-mir-502:mirbase
Length = 80
Score = 111 bits (56), Expect = 9e-26
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 ccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggca 72
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgct-agtgctgtctcaatgcaatgcacctgggca 59
Query: 73 agggttcagaga 84
||| ||||||||
Sbjct: 60 aggattcagaga 71
>31041_ppy-mir-501:mirbase
Length = 78
Score = 109 bits (55), Expect = 3e-25
Identities = 68/71 (95%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 14 cctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaa 73
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 cctctctaatccttgctatctgggtgct-agtgctgtctcaatgcaatgcacctgggcaa 59
Query: 74 gggttcagaga 84
|| ||||||||
Sbjct: 60 ggattcagaga 70
>27941_mml-mir-500:mirbase
Length = 84
Score = 89.7 bits (45), Expect = 3e-19
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgag-agtgctatctgaatgcaatgcacct 59
Query: 68 gggcaagggttcagaga 84
|||||||| ||| ||||
Sbjct: 60 gggcaaggattctgaga 76
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 89.7 bits (45), Expect = 3e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 17 ctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaaggg 76
|||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||||
Sbjct: 10 ctctaatccttgctctctgggtgct-agtgctgtctccatgcaatgcacctgggcaagga 68
Query: 77 ttcagagaaggtg 89
|||||||| ||||
Sbjct: 69 ttcagagagggtg 81
>26869_cfa-mir-502:mirbase
Length = 59
Score = 87.7 bits (44), Expect = 1e-18
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 21 aatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaagggttca 80
||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||
Sbjct: 1 aatccttgctatctgggtgct-agtgctgtctcaatgcaatgcacctgggcaaggattca 59
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtg-agagtgctttctgaatgcaatgcacct 59
Query: 68 gggcaagggttcagaga 84
|||||||| ||| ||||
Sbjct: 60 gggcaaggattccgaga 76
>28694_hsa-mir-500a:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtg-agagtgctgtctgaatgcaatgcacct 59
Query: 68 gggcaagggttcagaga 84
|||||||| ||| ||||
Sbjct: 60 gggcaaggattctgaga 76
>31040_ppy-mir-500:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtg-agagtgctgtctgaatgcaatgcacct 59
Query: 68 gggcaagggttcagaga 84
|||||||| ||| ||||
Sbjct: 60 gggcaaggattctgaga 76
>33404_bta-mir-500:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtg-agagtgctttctgaatgcaatgcacct 59
Query: 68 gggcaagggttcagaga 84
|||||||| ||| ||||
Sbjct: 60 gggcaaggattctgaga 76
>30403_ptr-mir-500:mirbase
Length = 83
Score = 77.8 bits (39), Expect = 1e-15
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 9 ctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctg 68
||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||
Sbjct: 1 ctccccctctctaatccttgctacctgggtg-agagtgctgtctgaatgcaatgcacctg 59
Query: 69 ggcaagg 75
|||||||
Sbjct: 60 ggcaagg 66
>27210_eca-mir-500:mirbase
Length = 84
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||| ||||||| |||| | ||| ||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtg-agagtgttgtctgaatgcaatgcacct 59
Query: 68 gggcaagggttcagaga 84
|||||||| ||| ||||
Sbjct: 60 gggcaaggattccgaga 76
>34114_ssc-mir-500:mirbase
Length = 80
Score = 65.9 bits (33), Expect = 5e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 12 cccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggc 71
|||||||||||||||||||| ||||||| |||||| | | ||||||||||||||||||
Sbjct: 1 cccctctctaatccttgctacctgggtg-agagtgctgtgtgaatgcaatgcacctgggc 59
Query: 72 aagggttcagaga 84
|||| ||| ||||
Sbjct: 60 aaggattctgaga 72
>26868_cfa-mir-500:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 2e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 21 aatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaagg 75
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 1 aatccttgctacctgggtgag-agtgctttctgaatgcaatgcacctgggcaagg 54
>28696_hsa-mir-501:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 43 agtgctatctcaatgcaatgcacctgggcaagggttcagagaaggtgagc 92
|||||| ||| ||||||||||||| |||||||| ||| |||| |||||||
Sbjct: 35 agtgctttctgaatgcaatgcacccgggcaaggattctgagagggtgagc 84
>28697_hsa-mir-501:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 43 agtgctatctcaatgcaatgcacctgggcaagggttcagagaaggtgagc 92
|||||| ||| ||||||||||||| |||||||| ||| |||| |||||||
Sbjct: 35 agtgctttctgaatgcaatgcacccgggcaaggattctgagagggtgagc 84
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 tccccctctctaatccttgctatctgggtg 39
|||||||||||||||||||||| |||||||
Sbjct: 1 tccccctctctaatccttgctacctgggtg 30
>30405_ptr-mir-501:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 43 agtgctatctcaatgcaatgcacctgggcaagggttcagagaaggtgagc 92
|||||| ||| ||||||||||||| |||||||| ||| |||| |||||||
Sbjct: 34 agtgctttctgaatgcaatgcacccgggcaaggattctgagagggtgagc 83
>28695_hsa-mir-500b:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 ccccctctctaatccttgctatctgggtg 39
||||||||||||||||||||| |||||||
Sbjct: 1 ccccctctctaatccttgctacctgggtg 29
>33406_bta-mir-502a-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 50 tctcaatgcaatgcacctgggcaagggttcagagaag 86
||||| |||||||||||||||||||| |||| |||||
Sbjct: 49 tctcagtgcaatgcacctgggcaaggattcacagaag 85
>27212_eca-mir-501:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 aatgcaatgcacctgggcaagg 75
||||||||||||||||||||||
Sbjct: 46 aatgcaatgcacctgggcaagg 67
