miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 117 bits (59), Expect = 3e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 ctgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcac 65
|||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 4 ctgctccctctctctaatccttgctatctgggtgct-agtgctgtctcaatgcaatgcac 62
Query: 66 ctgggcaagggttcagagaaggtgagc 92
|| ||||||| |||||||| |||||||
Sbjct: 63 ctaggcaaggattcagagagggtgagc 89
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 ctctgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgc 63
|||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||
Sbjct: 2 ctctgctccccctctctaatccttgctacctgggtg-agagtgctaactgaatgcaatgc 60
Query: 64 acctgggcaagggttcagaga 84
|||||||||||| ||||||||
Sbjct: 61 acctgggcaaggattcagaga 81
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 89.7 bits (45), Expect = 6e-18
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 17 ctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaaggg 76
|||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||||
Sbjct: 14 ctctaatccttgctctctgggtgct-agtgctgtctccatgcaatgcacctgggcaagga 72
Query: 77 ttcagagaaggtg 89
|||||||| ||||
Sbjct: 73 ttcagagagggtg 85
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 85.7 bits (43), Expect = 9e-17
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 6 ctgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcac 65
||||| ||||||||||||||||||| ||||||||| || |||| | || |||||||||||
Sbjct: 4 ctgcttcccctctctaatccttgctgtctgggtgc-taatgctgtgtcgatgcaatgcac 62
Query: 66 ctgggcaagggttcagaga 84
|||||||||| ||||||||
Sbjct: 63 ctgggcaaggattcagaga 81
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||||||||||| |||||| || |||||| |||||||
Sbjct: 6 gctccccctctctaatccttgctatctgggtg-agagtgctttccgaatgcagtgcacct 64
Query: 68 gggcaagggtt 78
|||||||||||
Sbjct: 65 gggcaagggtt 75
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 75.8 bits (38), Expect = 9e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 11 ccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctggg 70
||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||
Sbjct: 9 ccccctctctaatccttgctacctgggtgag-agtgctgtctgaatgcaatgcacctggg 67
Query: 71 caagggttcagaga 84
||||| ||| ||||
Sbjct: 68 caaggattctgaga 81
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 15 ctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaag 74
||||||||||||||||| |||| |||| |||||| ||| ||||||||||||||||||||
Sbjct: 13 ctctctaatccttgctacctggttgct-agtgctttctatatgcaatgcacctgggcaag 71
Query: 75 ggttcagag 83
| |||||||
Sbjct: 72 gattcagag 80
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||||||||||||||||||||| ||||||| |||||| | | |||||| |||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtg-agagtgctttgtgaatgcagtgcacct 64
Query: 68 gggcaagggttc 79
||||||||||||
Sbjct: 65 gggcaagggttc 76
>RF01903;mir-500;AAIY01038584.1/399-317 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 36/37 (97%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 30 tatctgggtgcttagtgctatctcaatgcaatgcacc 66
|||||||||||| ||||||||||||||||||||||||
Sbjct: 24 tatctgggtgct-agtgctatctcaatgcaatgcacc 59
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
|||||| ||||||||||||||||| ||||||| |||||| ||| |||||||| |||||
Sbjct: 6 gctccctctctctaatccttgctacctgggtg-agagtgctttctgaatgcaattcacct 64
Query: 68 gggcaagg 75
|||||||
Sbjct: 65 aggcaagg 72
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 43 agtgctatctcaatgcaatgcacctgggcaagggttcagagaaggtgagc 92
|||||| ||| ||||||||||||| |||||||| ||| |||| |||||||
Sbjct: 40 agtgctttctgaatgcaatgcacccgggcaaggattctgagagggtgagc 89
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 gctccccctctctaatccttgctatctgggtg 39
||||||||| |||||||||||||| |||||||
Sbjct: 6 gctccccctgtctaatccttgctacctgggtg 37
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 43 agtgctatctcaatgcaatgcacctgggcaag 74
|||||| ||||||||||||||| |||||||||
Sbjct: 40 agtgctgtctcaatgcaatgcatctgggcaag 71
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tctgctccccctctctaatccttg 28
||||||||||||||||||||||||
Sbjct: 3 tctgctccccctctctaatccttg 26
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 45 tgctatctcaatgcaatgcacctgggcaagg 75
|||| ||| ||||||||||||||||||||||
Sbjct: 46 tgctttctgaatgcaatgcacctgggcaagg 76
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 aatgcaatgcacctgggcaagg 75
||||||||||||||||||||||
Sbjct: 51 aatgcaatgcacctgggcaagg 72
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 tccccctctctaatccttgctatctgggtg 39
|||| ||||||||||||||||| |||||||
Sbjct: 8 tccctctctctaatccttgctacctgggtg 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 aatgcaatgcacctgggcaagg 75
||||||||||||||||||||||
Sbjct: 51 aatgcaatgcacctgggcaagg 72
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 43 agtgctatctcaatgcaatgcacctgggcaagggttcagaga 84
|||||| ||| ||||||||||||| |||||||| ||| ||||
Sbjct: 40 agtgctttctaaatgcaatgcacccgggcaaggattccgaga 81
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 9 ctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctg 68
|||||| |||||||||||| || ||||||| | ||||| |||||||||| ||||| ||
Sbjct: 7 ctccccttctctaatccttagtacctgggtg-tgggtgctgtctcaatgcagtgcacatg 65
Query: 69 ggcaag 74
||||||
Sbjct: 66 ggcaag 71
