miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AABR04040370.1/14458-14381 10116:Rattus
norvegicus (Norway rat)
Length = 78
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 3 tacttgaggagaaattatccttggtgtgtttgctcttttggatgaatcatacaagggtaa 62
Query: 61 tttctttttgagta 74
|||||||| |||||
Sbjct: 63 tttcttttcgagta 76
>RF00641;mir-154;AAGW01206554.1/1585-1664 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 89.7 bits (45), Expect = 4e-18
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggctctttt--ggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| ||| | || |||||||||||||||||
Sbjct: 3 tacttgaggagaaattatccttggtgtgttcgctttattcgtgatgaatcatacaaggac 62
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 63 aatttctttttgagta 78
>RF00641;mir-154;AAIY01699599.1/4687-4765 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggct 34
||||||||||||||||| ||||||||||||||||
Sbjct: 3 tacttgaggagaaattacccttggtgtgttggct 36
>RF00641;mir-154;AAQR01332678.1/6090-6172 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 46 atcatacaaggataatttctttttgagta 74
|||||||||||| |||||||||| |||||
Sbjct: 53 atcatacaaggacaatttcttttagagta 81
