miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00776;mir-540;AAHY01103461.1/3557-3474 10090:Mus musculus
(house mouse)
Length = 84
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 tgggccaagggtcaccctctgactctgtggccaagggtagacaggtcagaggtcgatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tgggccaagggtcaccctctgactctgtggccaagggtagacaggtcagaggtcgatcct 69
Query: 61 gggccta 67
|||||||
Sbjct: 70 gggccta 76
>RF00776;mir-540;AAQQ01350179.1/20-102 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 83
Score = 65.9 bits (33), Expect = 6e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1 tgggccaagggtcaccctctgactctgtggccaagggtagacaggtcagaggt 53
|||||| |||||||||||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 10 tgggcccagggtcaccctctgactctgcggccacgggcagacagggcagaggt 62
>RF00776;mir-540;ABRP01372708.1/895-975 132908:Pteropus vampyrus
(large flying fox)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 13 caccctctgactctgtggccaagggtagacaggtcagaggt 53
|||||||||||| ||||||| ||| ||||||| |||||||
Sbjct: 21 caccctctgacttggtggccaggggcagacaggccagaggt 61
