miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054369.1/755-834 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
||||||||||||||||||| || ||||||||| || |||||||||||||||||||||||
Sbjct: 5 cttaatgagaagttgcccgtgtttttttcgctgaatctgtgacgaaacattcgcggtgca 64
Query: 63 cttctttttcag 74
||||||||||||
Sbjct: 65 cttctttttcag 76
>RF00641;mir-154;AAYZ01424897.1/234-313 9978:Ochotona princeps
(American pika)
Length = 80
Score = 79.8 bits (40), Expect = 4e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
||||| |||||| |||||| || ||||||||| ||| || ||||||||||||||||||||
Sbjct: 5 cttaaggagaagctgcccgtgtctttttcgctgtatttgggacgaaacattcgcggtgca 64
Query: 63 cttctttttcag 74
|||||| |||||
Sbjct: 65 cttcttcttcag 76
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 10 agaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 69
||||||||||| || ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 11 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 70
Query: 70 ttc 72
|||
Sbjct: 71 ttc 73
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 27 ttttcgctttatatgtgacgaaacattcgcggtgcacttcttttt 71
||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 29 ttttcgctttatacgtgacgaaacaaacatggtgcacttcttttt 73
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 27 ttttcgctttatatgtgacgaaacattcgcggtgcacttctttt 70
|||||||||||| |||||||||||| | ||||||||||||||
Sbjct: 29 ttttcgctttatgtgtgacgaaacaaacatggtgcacttctttt 72
