miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;ABRQ01321591.1/2376-2461 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 129 bits (65), Expect = 7e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 9 gtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcgacccatact 68
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 6 gtggcccatgaaatcaagcgtgggtgagacctggtgcaaaacaggaaggcgacccatact 65
Query: 69 tggtttcagtggctgcaagaa 89
||||||||| |||||| ||||
Sbjct: 66 tggtttcagaggctgcgagaa 86
>RF00892;mir-551;AAKN02050963.1/24909-24994 10141:Cavia porcellus
(domestic guinea pig)
Length = 86
Score = 123 bits (62), Expect = 4e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 4 ctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcgaccc 63
||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct: 1 ctcttgtggcccaggaaatcaagcgtgggtgagacctggtgcggaaggggaaggcgaccc 60
Query: 64 atacttggtttcagtggctgcaagaa 89
|||||||||||||| |||||||||||
Sbjct: 61 atacttggtttcagaggctgcaagaa 86
>RF00892;mir-551;AAQR01614836.1/887-972 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 113 bits (57), Expect = 4e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 11 ggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcgacccatacttg 70
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8 ggcccgtgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccacacttg 67
Query: 71 gtttcagtggctg 83
||||||| |||||
Sbjct: 68 gtttcaggggctg 80
>RF00892;mir-551;AANN01687869.1/1924-1838 9365:Erinaceus europaeus
(western European hedgehog)
Length = 87
Score = 99.6 bits (50), Expect = 6e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 10 tggcccatgaaatcaagcttgggtgagacctggtgcagaac-aggaaggcgacccatact 68
|||||||||||||||||| ||||||||||||||| |||||| || |||||||||||||||
Sbjct: 7 tggcccatgaaatcaagcctgggtgagacctggtacagaacaagaaaggcgacccatact 66
Query: 69 tggtttcagtggct 82
||||||||| ||||
Sbjct: 67 tggtttcagaggct 80
>RF00892;mir-551;AAWZ01032406.1/96128-96215 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 65.9 bits (33), Expect = 9e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 18 gaaatcaagcttgggtgagacctggtgcaga-acaggaaggcgacccatacttggtttca 76
||||||||| ||||||||||||| ||| | | || |||||||||||||||||||||||||
Sbjct: 16 gaaatcaaggttgggtgagacctcgtgaacagactggaaggcgacccatacttggtttca 75
Query: 77 g 77
|
Sbjct: 76 g 76
>RF00892;mir-551;ABQF01023095.1/42853-42939 59729:Taeniopygia
guttata
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagtggctg 83
|||||||||||||||||||||||| |||||
Sbjct: 52 aaggcgacccatacttggtttcaggggctg 81
>RF00892;mir-551;AAFR03046841.1/43899-43813 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagtggct 82
|||||||||||||||||||||||| ||||
Sbjct: 52 aaggcgacccatacttggtttcaggggct 80
>RF00892;mir-551;AADN02021036.1/52994-52908 9031:Gallus gallus
(chicken)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 aggcgacccatacttggtttcagtggctg 83
||||||||||||||||||||||| |||||
Sbjct: 53 aggcgacccatacttggtttcaggggctg 81
>RF00892;mir-551;AAVX01059360.1/184-266 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 aggaaggcgacccatacttggtttc 75
|||||||||||||||||||||||||
Sbjct: 48 aggaaggcgacccatacttggtttc 72
