miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28905_hsa-mir-590:mirbase
Length = 97
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 65
Query: 61 tataagctagtctctgattga 81
|||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86
>28906_hsa-mir-590:mirbase
Length = 97
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 65
Query: 61 tataagctagtctctgattga 81
|||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86
>30525_ptr-mir-590:mirbase
Length = 96
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 64
Query: 61 tataagctagtctctgattga 81
|||||||||||||||||||||
Sbjct: 65 tataagctagtctctgattga 85
>32219_mmu-mir-590:mirbase
Length = 81
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
Query: 61 tataagctagtctctgattga 81
|||||||||||||||||||||
Sbjct: 61 tataagctagtctctgattga 81
>31169_ppy-mir-590:mirbase
Length = 97
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaattttatg 65
Query: 61 tataagctagtctctgattga 81
|||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86
>31170_ppy-mir-590:mirbase
Length = 97
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaattttatg 65
Query: 61 tataagctagtctctgattga 81
|||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86
>28037_mml-mir-590:mirbase
Length = 97
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatg 65
Query: 61 tataagctagtctct 75
|||||||| ||||||
Sbjct: 66 tataagctggtctct 80
>28038_mml-mir-590:mirbase
Length = 97
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatg 65
Query: 61 tataagctagtctct 75
|||||||| ||||||
Sbjct: 66 tataagctggtctct 80
>27238_eca-mir-590:mirbase
Length = 81
Score = 91.7 bits (46), Expect = 7e-20
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 3 tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 62
||||||| |||||||||||||||||| |||||| | ||| || |||||||||||||||
Sbjct: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
Query: 63 taagctagtctctgattg 80
||||||||||||||||||
Sbjct: 64 taagctagtctctgattg 81
>27239_eca-mir-590:mirbase
Length = 81
Score = 91.7 bits (46), Expect = 7e-20
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 3 tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 62
||||||| |||||||||||||||||| |||||| | ||| || |||||||||||||||
Sbjct: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
Query: 63 taagctagtctctgattg 80
||||||||||||||||||
Sbjct: 64 taagctagtctctgattg 81
>31563_oan-mir-590:mirbase
Length = 122
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 3 tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 62
|||||||||||||||| ||||||||| |||||| || | || || ||||| ||||||| |
Sbjct: 23 tcagaaatgagcttatccataaaagtacagtatcgtca-gtaaacctgtacttttatgga 81
Query: 63 taagctagtctctgattga 81
|||||||||||||||||||
Sbjct: 82 taagctagtctctgattga 100
>26887_cfa-mir-590:mirbase
Length = 61
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 11 gagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgtataagctag 70
|||||||||||||||||| ||||||| | ||| || |||||||||||||||||||||||
Sbjct: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagctag 60
Query: 71 t 71
|
Sbjct: 61 t 61
