miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01922;mir-654;AC121784.2/118742-118845 10090:Mus musculus
(house mouse)
Length = 104
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 ctcggtaagtgggaagatggtaagctgcagaacatgtgtgtttctcatgtcatatgtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ctcggtaagtgggaagatggtaagctgcagaacatgtgtgtttctcatgtcatatgtctg 70
Query: 61 ctgaccatcacctttgggtctctg 84
||||||||||||||||||||||||
Sbjct: 71 ctgaccatcacctttgggtctctg 94
>RF01922;mir-654;AAHX01046584.1/28127-28024 10116:Rattus
norvegicus (Norway rat)
Length = 104
Score = 103 bits (52), Expect = 3e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 4 ggtaagtgggaagatggtaagctgcagaacatgtgtgtttctcatgtcatatgtctgctg 63
|||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||||
Sbjct: 14 ggtaagtgggaagatggtgaactgcagaacatgtgtgtttctcgtgtcgtatgtctgctg 73
Query: 64 accatcaccttt 75
||| ||||||||
Sbjct: 74 accgtcaccttt 85
>RF01922;mir-654;AAFC03087120.1/1102-999 9913:Bos taurus (cattle)
Length = 104
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 tgtcatatgtctgctgaccatcaccttt 75
||||||||||||||||||||||||||||
Sbjct: 58 tgtcatatgtctgctgaccatcaccttt 85
>RF01922;mir-654;AANU01197805.1/78571-78674 9544:Macaca mulatta
(rhesus monkey)
Length = 104
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 catatgtctgctgaccatcaccttt 75
|||||||||||||||||||||||||
Sbjct: 61 catatgtctgctgaccatcaccttt 85
>RF01922;mir-654;ABRO01197047.1/446-549 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 tgtcatatgtctgctgaccatcaccttt 75
|||||||||||||| |||||||||||||
Sbjct: 58 tgtcatatgtctgccgaccatcaccttt 85
