miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00340;SNORA36;AC158963.3/185991-186122 10090:Mus musculus (house
mouse)
Length = 132
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctac 128
Query: 61 acat 64
||||
Sbjct: 129 acat 132
>RF00340;SNORA36;AAHX01095142.1/71787-71884 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 105 bits (53), Expect = 7e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctac 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ctggctggggaaaaagattggatagaaaacattattctattcatttactccccagcctac 94
Query: 61 a 61
|
Sbjct: 95 a 95
>RF00340;SNORA36;AANN01451496.1/2498-2631 9365:Erinaceus europaeus
(western European hedgehog)
Length = 134
Score = 71.9 bits (36), Expect = 9e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 14 atgactggatagaaaacattattctattcatttact 49
||||||||||||||||||||||||||||||||||||
Sbjct: 84 atgactggatagaaaacattattctattcatttact 119
>RF00340;SNORA36;AAIY01703741.1/615-736 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 122
Score = 61.9 bits (31), Expect = 9e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 3 ggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctaca 61
|||| |||||||||||||| ||||||| ||||||||||||| || | |||||||||||
Sbjct: 61 ggcttgggaaaatgactgggtagaaaatattattctattcactttgttcccagcctaca 119
>RF00340;SNORA36;AAIY01139424.1/1111-986 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 126
Score = 61.9 bits (31), Expect = 9e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 3 ggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctaca 61
|||| |||||||||||||| ||||||| ||||||||||||| || | |||||||||||
Sbjct: 65 ggcttgggaaaatgactgggtagaaaatattattctattcactttgttcccagcctaca 123
>RF00340;SNORA36;AAGU02530612.1/4787-4918 9785:Loxodonta africana
(African savanna elephant)
Length = 132
Score = 61.9 bits (31), Expect = 9e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 3 ggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctaca 61
|||| |||||||||| ||||||||||||||| | |||||||||| | |||||||||||
Sbjct: 71 ggctagggaaaatgaatggatagaaaacatttctttattcatttatttcccagcctaca 129
>RF00340;SNORA36;ABDC01299701.1/1392-1522 30608:Microcebus murinus
(gray mouse lemur)
Length = 131
Score = 60.0 bits (30), Expect = 4e-09
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 12 aaatgactggatagaaaacattattctattcatttactccccagcctaca 61
|||||| ||||||||||| |||| |||||||||||| |||||||||||||
Sbjct: 80 aaatgattggatagaaaatattactctattcattta-tccccagcctaca 128
>RF00340;SNORA36;AAIY01572960.1/1835-1916 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 82
Score = 58.0 bits (29), Expect = 1e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 9 ggaaaatgactggatagaaaacattattctattcatttactccccagcctaca 61
||||||||||||| ||||||| ||||||||||||| || | |||||||||||
Sbjct: 27 ggaaaatgactgggtagaaaatattattctattcactttgttcccagcctaca 79
>RF00340;SNORA36;AAQR01359701.1/751-883 30611:Otolemur garnettii
(small-eared galago)
Length = 133
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 12 aaatgactggatagaaaacattattctattcattta 47
||||||||||||||||| | ||||||||||||||||
Sbjct: 80 aaatgactggatagaaagccttattctattcattta 115
>RF00340;SNORA36;ABRP01204575.1/8121-8254 132908:Pteropus vampyrus
(large flying fox)
Length = 134
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 15 tgactggatagaaaacattattctattcatttact 49
|||||||||||||| ||||| ||||||||||||||
Sbjct: 85 tgactggatagaaagcattactctattcatttact 119
>RF00340;SNORA36;ABDC01435816.1/866-766 30608:Microcebus murinus
(gray mouse lemur)
Length = 101
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 atgactggatagaaaacattattctattcatttac 48
||||||||||||||| || ||||||||||||||||
Sbjct: 50 atgactggatagaaagcactattctattcatttac 84
>RF00340;SNORA36;ABDC01171934.1/8247-8116 30608:Microcebus murinus
(gray mouse lemur)
Length = 132
Score = 52.0 bits (26), Expect = 9e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 3 ggctggggaaaatgactggatagaaaacattattctattcatttac 48
|||||||| | | |||||| |||||| |||||||||||||||||||
Sbjct: 65 ggctgggggagacgactgggtagaaagcattattctattcatttac 110
>RF00340;SNORA36;AAKN02019180.1/128364-128494 10141:Cavia porcellus
(domestic guinea pig)
Length = 131
Score = 52.0 bits (26), Expect = 9e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 10 gaaaatgactggatagaaaacattattctattcattta 47
|||||||| ||||||||||| ||||||||||||||||
Sbjct: 78 gaaaatgattggatagaaaatgttattctattcattta 115
>RF00340;SNORA36;AAIY01357452.1/2742-2844 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 103
Score = 52.0 bits (26), Expect = 9e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 8 gggaaaatgactggatagaaaacattattctattcatttactccccagcctaca 61
|||||||||||||| | ||||| ||||||||||||| || | |||||||||||
Sbjct: 47 gggaaaatgactgggttgaaaatattattctattcactttgttcccagcctaca 100
>RF00340;SNORA36;AAPE01499728.1/230-104 59463:Myotis lucifugus
(little brown bat)
Length = 127
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 14 atgactggatagaaaacattattctattcatttactccccagcct 58
|||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct: 77 atgattggatagaaaacattgctctattcatttacctcccagcct 121
>RF00340;SNORA36;AAQR01582454.1/576-446 30611:Otolemur garnettii
(small-eared galago)
Length = 131
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 10 gaaaatgactggatagaaaacattattctattcattt 46
|||||||||||| ||||| |||||||||||||||||
Sbjct: 75 gaaaatgactgggtagaaggcattattctattcattt 111
>RF00340;SNORA36;ABRO01217667.1/6562-6691 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 130
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 33 tattctattcatttactccccagcctaca 61
||||||||||||||||| |||||||||||
Sbjct: 99 tattctattcatttacttcccagcctaca 127
>RF00340;SNORA36;AAGW01325785.1/1194-1323 9986:Oryctolagus cuniculus
(rabbit)
Length = 130
Score = 50.1 bits (25), Expect = 3e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctac 60
|||||| |||||||| | |||||||||| ||||||||||||| || ||||||||||||
Sbjct: 68 ctggctagggaaaatcatcggatagaaaatgttattctattcatata-tccccagcctac 126
Query: 61 a 61
|
Sbjct: 127 a 127
>RF00340;SNORA36;AAIY01051702.1/1601-1471 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 131
Score = 48.1 bits (24), Expect = 1e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 3 ggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctacac 62
|||| |||||||||| || ||||||| ||||||||||||| || | ||||||||||||
Sbjct: 70 ggcttgggaaaatgatggggtagaaaatattattctattcactttgttcccagcctacac 129
>RF00340;SNORA36;AAPE01522613.1/608-478 59463:Myotis lucifugus
(little brown bat)
Length = 131
Score = 42.1 bits (21), Expect = 8e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 15 tgactggatagaaaacattattctattcatttactccccagccta 59
|||||| |||||||| ||| ||||||||||||| |||||||||
Sbjct: 82 tgactgaatagaaaattttactctattcatttacctcccagccta 126
>RF00340;SNORA36;ABDC01176282.1/10690-10814 30608:Microcebus murinus
(gray mouse lemur)
Length = 125
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 atgactggatagaaaacattattct 38
||||||||||||||| |||||||||
Sbjct: 77 atgactggatagaaagcattattct 101
>RF00340;SNORA36;AAKN02004756.1/29029-28904 10141:Cavia porcellus
(domestic guinea pig)
Length = 126
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 19 tggatagaaaacattattctattcattta 47
||||||||||| ||||||||||||||||
Sbjct: 83 tggatagaaaatgttattctattcattta 111
