miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00921;mir-665;AAHY01103461.1/3314-3221 10090:Mus musculus
(house mouse)
Length = 94
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 agaacagggtctccttgaggggcctctgcctctatccaggattatgtttttatgaccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaacagggtctccttgaggggcctctgcctctatccaggattatgtttttatgaccagg 60
Query: 61 aggctgaggtcccttacaggcggcctcttactct 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 aggctgaggtcccttacaggcggcctcttactct 94
>RF00921;mir-665;AACZ02151772.1/1457-1547 9598:Pan troglodytes
(chimpanzee)
Length = 91
Score = 69.9 bits (35), Expect = 6e-12
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 6 agggtctccttgaggggcctctgcctctatccaggattatgtttttatgaccaggaggct 65
|||||||||| |||||| ||| ||||||| |||||| | | || ||||||||||||||
Sbjct: 6 agggtctcctggaggggtctccgcctctacccaggactct---ttcatgaccaggaggct 62
Query: 66 gaggtcccttacaggcggcctcttactct 94
|||| |||| ||||||||| |||||||||
Sbjct: 63 gaggcccctcacaggcggcttcttactct 91
>RF00921;mir-665;AAKN02051948.1/11925-12015 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 69.9 bits (35), Expect = 6e-12
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 6 agggtctccttgaggggcctctgcctctatccaggattatgtttttatgaccaggaggct 65
||||||||||| ||||| ||||||||||| |||||| | |||| ||||||||||||||
Sbjct: 6 agggtctccttaaggggtctctgcctctacccaggact---ttttcatgaccaggaggct 62
Query: 66 gaggtcccttacaggcggcctcttactct 94
|||| || | | |||||||||||| ||||
Sbjct: 63 gaggcccttcataggcggcctcttcctct 91
>RF00921;mir-665;AAQQ01350179.1/242-331 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 69/82 (84%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 13 ccttgaggggcctctgcctctatccaggattatgtttttatgaccaggaggctgaggtcc 72
|||||||||||| ||||||||| |||||| | || ||||||||||||| |||| ||
Sbjct: 13 ccttgaggggccgctgcctctaaccaggactttgc----atgaccaggaggcagaggccc 68
Query: 73 cttacaggcggcctcttactct 94
|| | |||||||||||||||||
Sbjct: 69 ctcataggcggcctcttactct 90
>RF00921;mir-665;AAYZ01391475.1/1433-1523 9978:Ochotona princeps
(American pika)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 agggtctccttgaggggcctctgcctct 33
||||||||||||||||||||||||||||
Sbjct: 6 agggtctccttgaggggcctctgcctct 33
>RF00921;mir-665;AAGU02593771.1/587-676 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 74/89 (83%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 6 agggtctccttgaggggcctctgcctctatccaggattatgtttttatgaccaggaggct 65
|||||||||||||||| |||| | ||||| |||||| | | | |||||||||||||
Sbjct: 6 agggtctccttgagggacctcggtctctacccaggactct----tcatgaccaggaggcc 61
Query: 66 gaggtcccttacaggcggcctcttactct 94
|||| |||| ||||||||||||||||||
Sbjct: 62 gaggcccctctcaggcggcctcttactct 90
>RF00921;mir-665;ABRN01400944.1/724-814 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 52 atgaccaggaggctgaggtcccttacaggcggc 84
|||||||||||||||||| |||| |||||||||
Sbjct: 49 atgaccaggaggctgaggcccctcacaggcggc 81
