miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00890;mir-668;AAKN02051949.1/123676-123741 10141:Cavia
porcellus (domestic guinea pig)
Length = 66
Score = 115 bits (58), Expect = 7e-26
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 ggtaagtgtgcctcgggtgagcatgcacttaatgtaggtgtatgtcactcggctcggccc 60
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 1 ggtaagtgtgcctcgggtgagcatgcatttaatgcaggtgtatgtcactcggctcggccc 60
Query: 61 actacc 66
||||||
Sbjct: 61 actacc 66
>RF00890;mir-668;ABRT010163754.1/3155-3220 9478:Tarsius syrichta
(Philippine tarsier)
Length = 66
Score = 87.7 bits (44), Expect = 2e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 11 cctcgggtgagcatgcacttaatgtaggtgtatgtcactcggctcggcccactacc 66
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct: 11 cctcgggtgagcatgcacttaatgcaggtgtatgtcacttggcttggcccactacc 66
>RF00890;mir-668;AAFC03087121.1/13899-13959 9913:Bos taurus
(cattle)
Length = 61
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ggtaagtgtgcctcgggtgagcatgca 27
|||||||||| ||||||||||||||||
Sbjct: 1 ggtaagtgtgtctcgggtgagcatgca 27
>RF00890;mir-668;AAEX02019639.1/160113-160173 9615:Canis lupus
familiaris (dog)
Length = 61
Score = 42.1 bits (21), Expect = 8e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 1 ggtaagtgtgcctcgggtgagcatgcacttaatgtaggtgtatgtcactcggc 53
|||||||| | |||||||||||||||| |||| | | ||||||||||||||
Sbjct: 1 ggtaagtgcgtctcgggtgagcatgcaattaaaatggtagtatgtcactcggc 53
