miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01920;mir-764;AAHY01204437.1/3239-3132 10090:Mus musculus (house
mouse)
Length = 108
Score = 214 bits (108), Expect = 2e-55
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 tcaacacaatctgaatcttggaggcaggtgctcacatgtcctcctccatgcttataaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaacacaatctgaatcttggaggcaggtgctcacatgtcctcctccatgcttataaata 60
Query: 61 catggaggaggccatagtggcaactgtcaccatgattgatttcgttgg 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catggaggaggccatagtggcaactgtcaccatgattgatttcgttgg 108
>RF01920;mir-764;ABRR01198668.1/21902-22011 30538:Lama pacos
(alpaca)
Length = 110
Score = 119 bits (60), Expect = 8e-27
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 14 aatcttggaggcaggtgctcacatgtcctcctccatgcttataa-atacatggaggaggc 72
||||| |||||||||||||||| ||||||| |||||||||| || ||| | |||||||||
Sbjct: 15 aatctaggaggcaggtgctcacttgtcctcttccatgcttagaagatatagggaggaggc 74
Query: 73 catagtggcaactgtcaccatgattgatttcgttgg 108
||||||||||||||||||||||||||||||| ||||
Sbjct: 75 catagtggcaactgtcaccatgattgatttcattgg 110
>RF01920;mir-764;AAIY01059417.1/2952-2845 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 108
Score = 115 bits (58), Expect = 1e-25
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 14 aatcttggaggcaggtgctcacatgtcctcctccatgcttataaatacatggaggaggcc 73
||||| |||||||||||||||| ||||||||||||||||| ||||| | |||||||| |
Sbjct: 14 aatctaggaggcaggtgctcacttgtcctcctccatgcttggaaatagagggaggaggtc 73
Query: 74 atagtggcaactgtcaccatgattgatttcgttg 107
||||||||||||| | ||||||||||||||||||
Sbjct: 74 atagtggcaactgcccccatgattgatttcgttg 107
>RF01920;mir-764;AANU01095684.1/3694-3803 9544:Macaca mulatta
(rhesus monkey)
Length = 110
Score = 111 bits (56), Expect = 2e-24
Identities = 87/96 (90%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 14 aatcttggaggcaggtgctcacatgtcctcctccatgcttataaa-tacatggaggaggc 72
||||| |||||||||||||||| |||||||||||||| || ||| |||| || ||||||
Sbjct: 15 aatctaggaggcaggtgctcacttgtcctcctccatggttggaaaatacaggggggaggc 74
Query: 73 catagtggcaactgtcaccatgattgatttcgttgg 108
||||||||||||||||||||||||| ||||||||||
Sbjct: 75 catagtggcaactgtcaccatgattaatttcgttgg 110
>RF01920;mir-764;ABRQ01091273.1/776-885 9813:Procavia capensis (cape
rock hyrax)
Length = 110
Score = 105 bits (53), Expect = 1e-22
Identities = 87/97 (89%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 13 gaatcttggaggcaggtgctcacatgtcctcctccatgcttataaa-tacatggaggagg 71
|||||| |||| ||||||||||| |||||||||||||| || ||| |||| ||||||||
Sbjct: 14 gaatctaggagacaggtgctcacttgtcctcctccatgattggaaaatacagggaggagg 73
Query: 72 ccatagtggcaactgtcaccatgattgatttcgttgg 108
|||||||||||||||||||| ||||||||||| ||||
Sbjct: 74 ccatagtggcaactgtcaccgtgattgatttcattgg 110
>RF01920;mir-764;AAKN02039766.1/25930-25821 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 95.6 bits (48), Expect = 1e-19
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 28 gtgctcacatgtcctcctccatgcttataa-atacatggaggaggccatagtggcaactg 86
|||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||
Sbjct: 29 gtgctcacttgtcctcctccatgtttgaaagatacagggaggaggccatagtggcaactg 88
Query: 87 tcaccatgattgattt 102
||||||||||||||||
Sbjct: 89 tcaccatgattgattt 104
>RF01920;mir-764;AAFC03083039.1/34010-33902 9913:Bos taurus (cattle)
Length = 109
Score = 69.9 bits (35), Expect = 6e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 22 aggcaggtgctcacatgtcctcctccatgcttataaatacatggaggaggccatagtggc 81
|||||||||||||| ||||| ||||| | ||| ||||||| ||||||||||| | ||||
Sbjct: 23 aggcaggtgctcactcgtccttctccacggttaaaaatacagggaggaggccagaatggc 82
Query: 82 aactgtcaccatgattgatttcgttgg 108
|||| |||| ||||||| |||| ||||
Sbjct: 83 aactatcactatgattgttttctttgg 109
