miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00888;mir-770;ABRO01129501.1/1686-1781 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 96
Score = 145 bits (73), Expect = 1e-34
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 gccaccttctgtgcccccagcaccacgtgtctgggccacgtgagcaacgccacgtgggcc 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3 gccaccttctgtgcccccagcaccacgtgtctgggccacgtgagcacggccacgtgggcc 62
Query: 61 tgacgtggagctggggccgcaggggtctg 89
|||||||| ||| ||||||||||||||||
Sbjct: 63 tgacgtggggctagggccgcaggggtctg 91
>RF00888;mir-770;AANU01197813.1/26259-26356 9544:Macaca mulatta
(rhesus monkey)
Length = 98
Score = 73.8 bits (37), Expect = 4e-13
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 1 gccaccttctgtgcccccagcaccacgtgtctgggccacgtgagcaacgccacgtgggcc 60
||||||||| | ||| |||| |||||||||| ||||||| ||||| ||| ||||||||
Sbjct: 6 gccaccttccgagcctccagtaccacgtgtcagggccacatgagctgggcctcgtgggcc 65
Query: 61 tgacgtggagctggggccgcaggggtctg 89
||| |||| ||||||||| ||||||||||
Sbjct: 66 tgatgtggtgctggggcctcaggggtctg 94
>RF00888;mir-770;AAWR02020057.1/98240-98339 9796:Equus caballus
(horse)
Length = 100
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 5 ccttctgtgcccccagcaccacgtgtctgggccacgtgagcaacgccacgtgggcctgac 64
||||| ||||| |||||||||||||||||||||| |||||||| | ||| |||||| ||
Sbjct: 11 ccttccgtgcctccagcaccacgtgtctgggccatgtgagcaaggtcacatgggcccgat 70
Query: 65 gtggagctgggg 76
|||| |||||||
Sbjct: 71 gtggtgctgggg 82
>RF00888;mir-770;ABRN01400939.1/11657-11708 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 52
Score = 60.0 bits (30), Expect = 5e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 23 ccacgtgtctgggccacgtgagcaacgccacgtgggcctgacgtgg 68
|||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct: 4 ccacgtgtctgggccacgtgagcagggcctcgtgggcctgaggtgg 49
