miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33460_bta-mir-874:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactcacttcctgccctggcccgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactcacttcctgccctggcccgagg 60
Query: 61 gaccgactggctgggc 76
||||||||||||||||
Sbjct: 61 gaccgactggctgggc 76
>33001_rno-mir-874:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactcacttcctgccctggcccgagg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactcgcttcctgccctggcccgagg 60
Query: 61 gaccgactggctgggc 76
||||||||||||||||
Sbjct: 61 gaccgactggctgggc 76
>26909_cfa-mir-874:mirbase
Length = 78
Score = 125 bits (63), Expect = 5e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccga 58
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
Query: 59 gggaccgactggctgggc 76
||||||||||||||||||
Sbjct: 61 gggaccgactggctgggc 78
>28126_mml-mir-874:mirbase
Length = 78
Score = 125 bits (63), Expect = 5e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccga 58
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagagtctcgcttcctgccctggcccga 60
Query: 59 gggaccgactggctgggc 76
||||||||||||||||||
Sbjct: 61 gggaccgactggctgggc 78
>29012_hsa-mir-874:mirbase
Length = 78
Score = 125 bits (63), Expect = 5e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccga 58
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
Query: 59 gggaccgactggctgggc 76
||||||||||||||||||
Sbjct: 61 gggaccgactggctgggc 78
>31249_ppy-mir-874:mirbase
Length = 78
Score = 125 bits (63), Expect = 5e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccga 58
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
Query: 59 gggaccgactggctgggc 76
||||||||||||||||||
Sbjct: 61 gggaccgactggctgggc 78
>30605_ptr-mir-874:mirbase
Length = 77
Score = 123 bits (62), Expect = 2e-29
Identities = 74/77 (96%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccga 58
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
Query: 59 gggaccgactggctggg 75
|||||||||||||||||
Sbjct: 61 gggaccgactggctggg 77
>27275_eca-mir-874:mirbase
Length = 60
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/60 (95%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 9 gcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccgagggaccga 66
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 gcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccgagggaccga 60
