miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00933;mir-875;CAAA01125963.1/23910-23986 10090:Mus musculus
(house mouse)
Length = 77
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 tctgtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgag 60
Query: 61 gctatgtttcactgagc 77
|||||||||||||||||
Sbjct: 61 gctatgtttcactgagc 77
>RF00933;mir-875;ABRQ01087343.1/1920-1844 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 99.6 bits (50), Expect = 5e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgagg 61
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgagg 61
>RF00933;mir-875;AAFR03006570.1/12434-12510 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 77
Score = 85.7 bits (43), Expect = 7e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 tctgtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgag 60
|||||||||| |||||||||| |||||||||||| |||||||||||||| |||| |||||
Sbjct: 1 tctgtggtacaatacctcagtcttatcaggtgttaattaaaatcacctggaaatgctgag 60
Query: 61 gctatgtttcactga 75
| | ||||||||||
Sbjct: 61 gttgcgtttcactga 75
>RF00933;mir-875;AAGU02544061.1/8344-8283 9785:Loxodonta africana
(African savanna elephant)
Length = 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 tcaggtgttcattaaaatcacctgaa 51
|||||||| |||||||||||||||||
Sbjct: 20 tcaggtgtacattaaaatcacctgaa 45
