miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32387_mmu-mir-1193:mirbase
Length = 121
Score = 240 bits (121), Expect = 2e-64
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 ctgaagggacaatgatgcccactgttctcggggtagctgtgtggatggtagaccggtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgaagggacaatgatgcccactgttctcggggtagctgtgtggatggtagaccggtgac 60
Query: 61 gtacacttcatttatgctgtaggtcacccgttttactatccaccaacacccagaccatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtacacttcatttatgctgtaggtcacccgttttactatccaccaacacccagaccatct 120
Query: 121 g 121
|
Sbjct: 121 g 121
>33013_rno-mir-1193:mirbase
Length = 120
Score = 137 bits (69), Expect = 2e-33
Identities = 93/101 (92%)
Strand = Plus / Plus
Query: 21 actgttctcggggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgt 80
|||| |||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 8 actgctctcagggtagctgtgaggatggtaaaccggtgacgtgcacttcatttatgctgt 67
Query: 81 aggtcacccgttttactatccaccaacacccagaccatctg 121
||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 68 aggtcacccgttttactatccgccagcacccagaccgtctg 108
>33014_rno-mir-1193:mirbase
Length = 120
Score = 137 bits (69), Expect = 2e-33
Identities = 93/101 (92%)
Strand = Plus / Plus
Query: 21 actgttctcggggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgt 80
|||| |||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 8 actgctctcagggtagctgtgaggatggtaaaccggtgacgtgcacttcatttatgctgt 67
Query: 81 aggtcacccgttttactatccaccaacacccagaccatctg 121
||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 68 aggtcacccgttttactatccgccagcacccagaccgtctg 108
>27284_eca-mir-1193:mirbase
Length = 121
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 31 gggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgtaggtcacccg 90
||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 31 gggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacccg 90
Query: 91 ttttactatccaccaacacccagaccatctg 121
||| |||||||| || ||||||| |||||||
Sbjct: 91 tttgactatccatcagcacccagtccatctg 121
>33884_oar-mir-1193:mirbase
Length = 104
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 31 gggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgtaggtcacccg 90
||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 12 gggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacccg 71
Query: 91 ttttactatccaccaacacccagaccatctg 121
||| |||||| |||| ||||||| |||||||
Sbjct: 72 tttgactatcaaccagcacccagtccatctg 102
>33885_oar-mir-1193:mirbase
Length = 104
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 31 gggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgtaggtcacccg 90
||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 12 gggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacccg 71
Query: 91 ttttactatccaccaacacccagaccatctg 121
||| |||||| |||| ||||||| |||||||
Sbjct: 72 tttgactatcaaccagcacccagtccatctg 102
>33469_bta-mir-1193:mirbase
Length = 105
Score = 109 bits (55), Expect = 5e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 31 gggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgtaggtcacccg 90
||||||||| | ||||||||| |||||||||| ||||||||||| | |||||||||||||
Sbjct: 15 gggtagctgaggggatggtaggccggtgacgtgcacttcatttacgatgtaggtcacccg 74
Query: 91 ttttactatccaccaacacccagaccatctg 121
||| ||||||||||| ||||||| |||||||
Sbjct: 75 tttgactatccaccagcacccagtccatctg 105
>29058_hsa-mir-1193:mirbase
Length = 78
Score = 97.6 bits (49), Expect = 2e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 33 gtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgtaggtcacccgtt 92
||||||| | |||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 1 gtagctgaggggatggtagaccggtgacgtgcacttcatttacgatgtaggtcacccgtt 60
Query: 93 ttactatccacca 105
| |||||||||||
Sbjct: 61 tgactatccacca 73
