miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00942;mir-1224;BC125016.1/1418-1502 10090:Mus musculus (house
mouse)
Length = 85
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gtgaggactggggaggtggagggtagcatcattagagccagagctctgtctcagctccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggactggggaggtggagggtagcatcattagagccagagctctgtctcagctccct 60
Query: 61 ctccccccacctcttctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcttctctcctcag 85
>RF00942;mir-1224;AAQQ01259737.1/1179-1264 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactggggaggtggagggtagcatcattagagccagagctctgtctcagctc-cc 59
||||||||| |||||||||||||||| ||| ||||| |||| ||||||||||| |
Sbjct: 1 gtgaggactcgggaggtggagggtagtgtcaccagagctagagtgatgtctcagctcact 60
Query: 60 tctccccccacctcttctctcctcag 85
|||||||||||||| |||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>RF00942;mir-1224;ABDC01030158.1/9889-9974 30608:Microcebus
murinus (gray mouse lemur)
Length = 86
Score = 60.0 bits (30), Expect = 5e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactggggaggtggagggtagcatcattagagccagagctctgtctcagctc-cc 59
||||||||| |||||||||||||| ||||| | || ||| | | |||||| ||||| |
Sbjct: 1 gtgaggactcgggaggtggagggtggcatcgtcagggcctggacgctgtcttagctcgct 60
Query: 60 tctccccccacctcttctctcctcag 85
|||||||||||||| |||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>RF00942;mir-1224;ABRQ01131005.1/1760-1845 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactggggaggtggagggtagcatcattagagccagagctctgtctcagctccct 60
||||||||| |||||||||||||| | ||| || ||||| || | |||||||| | ||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgtcaccagggccagggcacagtctcagcgcgct 60
Query: 61 c-tccccccacctcttctctcctcag 85
| |||||||||||| |||||||||||
Sbjct: 61 cctccccccacctcctctctcctcag 86
>RF00942;mir-1224;CABD01015108.1/8228-8312 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 tctccccccacctcttctctcctcag 85
|||||||||||||| |||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>RF00942;mir-1224;AAYZ01168547.1/11688-11773 9978:Ochotona
princeps (American pika)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 tctccccccacctcttctctcctcag 85
|||||||||||||| |||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
