miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32404_mmu-mir-1306:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
Query: 61 ggtggtgatggacagtccg 79
|||||||||||||||||||
Sbjct: 61 ggtggtgatggacagtccg 79
>29173_hsa-mir-1306:mirbase
Length = 85
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6 cagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 65
Query: 61 ggtggtgatggacagtccg 79
|||||||||||||||||||
Sbjct: 66 ggtggtgatggacagtccg 84
>30723_ptr-mir-1306:mirbase
Length = 84
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5 cagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 64
Query: 61 ggtggtgatggacagtccg 79
|||||||||||||||||||
Sbjct: 65 ggtggtgatggacagtccg 83
>31364_ppy-mir-1306:mirbase
Length = 85
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6 cagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 65
Query: 61 ggtggtgatggacagtccg 79
|||||||||||||||||||
Sbjct: 66 ggtggtgatggacagtccg 84
>34145_ssc-mir-1306:mirbase
Length = 80
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 3 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
Query: 63 tggtgatggacag 75
|||||||||||||
Sbjct: 61 tggtgatggacag 73
>34146_ssc-mir-1306:mirbase
Length = 80
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 3 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
Query: 63 tggtgatggacag 75
|||||||||||||
Sbjct: 61 tggtgatggacag 73
>25675_xla-mir-1306:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 5 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 ctccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtg 69
Query: 65 gtgatggacagtc 77
|||||||||||||
Sbjct: 70 gtgatggacagtc 82
>26047_gga-mir-1306:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 6 tccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtgg 65
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtgg 60
Query: 66 tgatggaca 74
|||||||||
Sbjct: 61 tgatggaca 69
>26914_cfa-mir-1306:mirbase
Length = 58
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 10 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
>33487_bta-mir-1306:mirbase
Length = 58
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 10 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
