miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01014;mir-1306;AAIY01554338.1/803-730 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
Query: 61 ggtggtgatgg 71
|||||||||||
Sbjct: 61 ggtggtgatgg 71
>RF01014;mir-1306;BAAE01177956.1/1380-1307 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 119 bits (60), Expect = 5e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 5 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 64
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5 ctccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttagctctggtg 64
Query: 65 gtgatgga 72
||||||||
Sbjct: 65 gtgatgga 72
>RF01014;mir-1306;ABQO010269158.1/2006-1933 9315:Macropus eugenii
(tammar wallaby)
Length = 74
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 5 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 64
|||||||| |||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct: 5 ctccaccagctcccctgcaaaagtccagtgatgcagacgtaatggatgttggctctggtg 64
Query: 65 gtgatggaca 74
||| ||||||
Sbjct: 65 gtgttggaca 74
>RF01014;mir-1306;AAVX01501338.1/278-205 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 5 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 64
||||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||
Sbjct: 5 ctccaccacctcccctgcaaacgtccagtgaggccgaggttatggacgttggctgcggtg 64
Query: 65 gtgatggac 73
|||||||||
Sbjct: 65 gtgatggac 73
>RF01014;mir-1306;AAGW01545204.1/4216-4143 9986:Oryctolagus
cuniculus (rabbit)
Length = 74
Score = 85.7 bits (43), Expect = 7e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 2 agtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctg 61
|||||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||
Sbjct: 2 agtctccaccacctccgttgcaaatgtccagtgatgcagtggtaatggacattggctctg 61
Query: 62 gtggtga 68
|| ||||
Sbjct: 62 gtagtga 68
>RF01014;mir-1306;ABVD01368311.1/815-888 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 74
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 5 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 64
|||| |||||||||||||||| ||| ||||||||||| ||||| || ||||| |||||||
Sbjct: 5 ctcctccacctcccctgcaaatgtctagtgatgcagaagtaatagatgttggatctggtg 64
Query: 65 gtgatggaca 74
||||||||||
Sbjct: 65 gtgatggaca 74
>RF01014;mir-1306;ABVD01062991.1/6561-6634 9358:Choloepus
hoffmanni (Hoffmann's two-fingered sloth)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 4 tctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggt 63
|||||| ||||| ||||||||||| | |||||||||||||| | ||| |||| ||||
Sbjct: 4 tctccagcaccttgcctgcaaacgttccctgatgcagaggtaacaggcgtcggctgtggt 63
Query: 64 ggtgatggaca 74
|||||||||||
Sbjct: 64 ggtgatggaca 74
