miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32405_mmu-mir-1839:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
Query: 61 acagccattgcct 73
|||||||||||||
Sbjct: 61 acagccattgcct 73
>27309_eca-mir-1839:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 4 aaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 60
>33503_bta-mir-1839:mirbase
Length = 72
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 4 gaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctacca 63
Query: 61 acagc 65
|||||
Sbjct: 64 acagc 68
>26923_cfa-mir-1839:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt-atctacc 59
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 4 gaaaaggtagatagaacaggtcttgttagcaaaataaattcaagacctacttaatctacc 63
Query: 60 aacagc 65
||||||
Sbjct: 64 aacagc 69
>34149_ssc-mir-1839:mirbase
Length = 80
Score = 105 bits (53), Expect = 4e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 8 gaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctacca 67
Query: 61 acagc 65
|||||
Sbjct: 68 acagc 72
>34150_ssc-mir-1839:mirbase
Length = 80
Score = 105 bits (53), Expect = 4e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 8 gaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctacca 67
Query: 61 acagc 65
|||||
Sbjct: 68 acagc 72
