miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00565;SCARNA3;AF357403.1/48-124 10090:Mus musculus (house
mouse)
Length = 77
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 gaatatggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gaatatggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccat 73
Query: 61 acaa 64
||||
Sbjct: 74 acaa 77
>RF00565;SCARNA3;AAHY01000491.1/8349-8488 10090:Mus musculus (house
mouse)
Length = 140
Score = 89.7 bits (45), Expect = 4e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccatacaa 64
||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||
Sbjct: 80 atggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccatacaa 139
Query: 65 c 65
|
Sbjct: 140 c 140
>RF00565;SCARNA3;AAGW01476849.1/2567-2707 9986:Oryctolagus cuniculus
(rabbit)
Length = 141
Score = 77.8 bits (39), Expect = 1e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccataca 63
||||||||||||||| ||||||| | |||||||| ||||||||||||| ||||||||||
Sbjct: 81 atggaggtctctgtcggacttaggacagctggctaagtctgatcgttcccctccataca 139
>RF00565;SCARNA3;AAKN02017748.1/6685-6826 10141:Cavia porcellus
(domestic guinea pig)
Length = 142
Score = 75.8 bits (38), Expect = 6e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgacttagaatagc-tggctgagtctgatcgttcacctccataca 63
||||||||||||||||||||||| | ||| ||||| ||||||||||||| ||||||||||
Sbjct: 81 atggaggtctctgtctgacttaggacagcctggctaagtctgatcgttcccctccataca 140
Query: 64 ac 65
||
Sbjct: 141 ac 142
>RF00565;SCARNA3;ABRO01407326.1/853-715 10020:Dipodomys ordii (Ord's
kangaroo rat)
Length = 139
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctcca 59
||||||||||||||||||||| | | |||||||| ||||||||||||| ||||||
Sbjct: 79 atggaggtctctgtctgacttggcacagctggctaagtctgatcgttcccctcca 133
>RF00565;SCARNA3;ABRT010451791.1/604-743 9478:Tarsius syrichta
(Philippine tarsier)
Length = 140
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 6 tggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccataca 63
|||||||||||||||||||||| || ||||| ||||||||||||| ||||||||||
Sbjct: 81 tggaggtctctgtctgacttaggtcagttggctaagtctgatcgttcccctccataca 138
>RF00565;SCARNA3;ABRR01301731.1/2182-2321 30538:Lama pacos (alpaca)
Length = 140
Score = 63.9 bits (32), Expect = 2e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 7 ggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctcc 58
||||||||||||||| ||||| | |||||||| ||||||||||||| |||||
Sbjct: 82 ggaggtctctgtctggcttaggacagctggctaagtctgatcgttcccctcc 133
>RF00565;SCARNA3;AAPN01009016.1/3687-3551 9258:Ornithorhynchus
anatinus (platypus)
Length = 137
Score = 61.9 bits (31), Expect = 8e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 6 tggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccatacaa 64
|||||||||||||||| |||| | |||||||| || |||||||||| |||||||||||
Sbjct: 78 tggaggtctctgtctggcttaaagcagctggctaagcctgatcgttcccctccatacaa 136
>RF00565;SCARNA3;AAYZ01576824.1/557-417 9978:Ochotona princeps
(American pika)
Length = 141
Score = 54.0 bits (27), Expect = 2e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 1 gaatatggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctcca 59
|||||||| |||||||||| ||||| | || ||||||||||||||||||| ||||||
Sbjct: 77 gaatatgggggtctctgtcagacttcgggcagttggctgagtctgatcgttcccctcca 135
>RF00565;SCARNA3;AAFR03026499.1/25128-24989 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 140
Score = 46.1 bits (23), Expect = 5e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 6 tggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccatacaa 64
|||||||||||||||| |||| | ||||| || || ||||||||| |||||||||||
Sbjct: 81 tggaggtctctgtctggtttaggacagctgactaagcttgatcgttcccctccatacaa 139
>RF00565;SCARNA3;AANN01162527.1/493-356 9365:Erinaceus europaeus
(western European hedgehog)
Length = 138
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgactt 25
|||||||||||||||||||||
Sbjct: 80 atggaggtctctgtctgactt 100
>RF00565;SCARNA3;AAPE01285910.1/740-601 59463:Myotis lucifugus
(little brown bat)
Length = 140
Score = 42.1 bits (21), Expect = 8e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccatacaa 64
||||||| |||||||| ||||| | |||||||| ||||| | |||| |||||||||||
Sbjct: 80 atggaggcttctgtctggcttaggacagctggctaagtctaagggttcccctccatacaa 139
Query: 65 c 65
|
Sbjct: 140 c 140
