miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00565;SCARNA3;AAHY01000491.1/8349-8488 10090:Mus musculus (house
mouse)
Length = 140
Score = 129 bits (65), Expect = 4e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 caacatggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 caacatggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccat 135
Query: 61 acaac 65
|||||
Sbjct: 136 acaac 140
>RF00565;SCARNA3;AAGW01476849.1/2567-2707 9986:Oryctolagus cuniculus
(rabbit)
Length = 141
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 2 aacatggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccata 61
|||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 78 aacatggaggtctctgtcggacttaggacagctggctaagtctgatcgttcccctccata 137
Query: 62 ca 63
||
Sbjct: 138 ca 139
>RF00565;SCARNA3;AAKN02017748.1/6685-6826 10141:Cavia porcellus
(domestic guinea pig)
Length = 142
Score = 97.6 bits (49), Expect = 2e-20
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 2 aacatggaggtctctgtctgacttaggatagc-tggctaagtccgatcgttcccctccat 60
|||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||
Sbjct: 78 aacatggaggtctctgtctgacttaggacagcctggctaagtctgatcgttcccctccat 137
Query: 61 acaac 65
|||||
Sbjct: 138 acaac 142
>RF00565;SCARNA3;AF357403.1/48-124 10090:Mus musculus (house
mouse)
Length = 77
Score = 87.7 bits (44), Expect = 2e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccatacaa 64
||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||
Sbjct: 18 atggaggtctctgtctgacttagaatagctggctgagtctgatcgttcacctccatacaa 77
>RF00565;SCARNA3;ABRR01301731.1/2182-2321 30538:Lama pacos (alpaca)
Length = 140
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 caacatggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctcc 58
||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct: 76 caacacggaggtctctgtctggcttaggacagctggctaagtctgatcgttcccctcc 133
>RF00565;SCARNA3;ABRT010451791.1/604-743 9478:Tarsius syrichta
(Philippine tarsier)
Length = 140
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 6 tggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccataca 63
||||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct: 81 tggaggtctctgtctgacttaggtcagttggctaagtctgatcgttcccctccataca 138
>RF00565;SCARNA3;ABRO01407326.1/853-715 10020:Dipodomys ordii (Ord's
kangaroo rat)
Length = 139
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 2 aacatggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctcca 59
|||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||
Sbjct: 76 aacatggaggtctctgtctgacttggcacagctggctaagtctgatcgttcccctcca 133
>RF00565;SCARNA3;AAPE01285910.1/740-601 59463:Myotis lucifugus
(little brown bat)
Length = 140
Score = 63.9 bits (32), Expect = 2e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 2 aacatggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccata 61
|||||||||| |||||||| ||||||| ||||||||||||| | |||||||||||||
Sbjct: 77 aacatggaggcttctgtctggcttaggacagctggctaagtctaagggttcccctccata 136
Query: 62 caac 65
||||
Sbjct: 137 caac 140
>RF00565;SCARNA3;AAPN01009016.1/3687-3551 9258:Ornithorhynchus
anatinus (platypus)
Length = 137
Score = 61.9 bits (31), Expect = 9e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 6 tggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccatacaa 64
|||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||
Sbjct: 78 tggaggtctctgtctggcttaaagcagctggctaagcctgatcgttcccctccatacaa 136
>RF00565;SCARNA3;AAFR03026499.1/25128-24989 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 140
Score = 61.9 bits (31), Expect = 9e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 6 tggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccatacaa 64
|||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 81 tggaggtctctgtctggtttaggacagctgactaagcttgatcgttcccctccatacaa 139
>RF00565;SCARNA3;ABQF01041134.1/109747-109881 59729:Taeniopygia
guttata
Length = 135
Score = 52.0 bits (26), Expect = 8e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 6 tggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccataca 63
|||||||||||||||| |||||| ||| ||||| || |||||||||||||| ||||
Sbjct: 76 tggaggtctctgtctgctttaggacagccagctaaatcagatcgttcccctccttaca 133
>RF00565;SCARNA3;AANN01162527.1/493-356 9365:Erinaceus europaeus
(western European hedgehog)
Length = 138
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 aacatggaggtctctgtctgactt 25
||||||||||||||||||||||||
Sbjct: 77 aacatggaggtctctgtctgactt 100
>RF00565;SCARNA3;AAYZ01576824.1/557-417 9978:Ochotona princeps
(American pika)
Length = 141
Score = 46.1 bits (23), Expect = 5e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 5 atggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctcca 59
|||| |||||||||| ||||| || || ||||| |||| |||||||||||||||
Sbjct: 81 atgggggtctctgtcagacttcgggcagttggctgagtctgatcgttcccctcca 135
>RF00565;SCARNA3;AANN01719897.1/1253-1120 9365:Erinaceus europaeus
(western European hedgehog)
Length = 134
Score = 44.1 bits (22), Expect = 2e-04
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 2 aacatggaggtctctgtctgacttaggatagctggctaagtccgatcgttcccctccata 61
|||| ||||||||||||||||||| ||| ||| ||||||| ||||||| |||||||||
Sbjct: 73 aacacggaggtctctgtctgactttggacagc-cactaagtcagatcgtt-ccctccata 130
Query: 62 ca 63
||
Sbjct: 131 ca 132
