miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02017;mir-1912;AAHY01204438.1/7294-7215 10090:Mus musculus
(house mouse)
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 6 ctctaggatgtgctcattgcatgggctgtgtagatttttatttaatacacagaacatgca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctaggatgtgctcattgcatgggctgtgtagatttttatttaatacacagaacatgca 60
Query: 66 gtgagaacttgatagagatt 85
||||||||||||||||||||
Sbjct: 61 gtgagaacttgatagagatt 80
>RF02017;mir-1912;AANN01763307.1/187-108 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 6 ctctaggatgtgctcattgcatgggctgtgtagatttttatttaatacacagaacatgca 65
||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||
Sbjct: 1 ctctaggatgtactaattgcatgggctgtgtatatttttatttaatacccagagcatgca 60
Query: 66 gtgagaac 73
||| ||||
Sbjct: 61 gtgtgaac 68
>RF02017;mir-1912;ABRQ01091277.1/2521-2600 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 6 ctctaggatgtgctcattgcatgggctgtgtagatttttatttaatacacagaacatgca 65
|||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||
Sbjct: 1 ctctaggatgtgctcattgcatgggctgtgtatctttccatttaatacccagagcatgca 60
Query: 66 gtgagaacttgatagagatt 85
||| |||| | |||||||||
Sbjct: 61 gtgtgaacataatagagatt 80
>RF02017;mir-1912;AAKN02039766.1/17807-17728 10141:Cavia porcellus
(domestic guinea pig)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 6 ctctaggatgtgctcattgcatgggctgtgtagatttttatttaatacacagaacatgca 65
||||||||||||||||||||||| ||||||| ||||||||| |||| |||| ||||||
Sbjct: 1 ctctaggatgtgctcattgcatgaactgtgtatatttttattcgatacccagagcatgca 60
Query: 66 gtgagaacttgatagagat 84
||| |||| | ||||||||
Sbjct: 61 gtgtgaacataatagagat 79
>RF02017;mir-1912;AAPE01552109.1/11307-11386 59463:Myotis
lucifugus (little brown bat)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 6 ctctaggatgtgctcattgcatgggctgtgtagatttttatttaatacacagaacatgca 65
|||||||||||||||| |||||||| |||| | ||||||||| ||||| |||| |||||
Sbjct: 1 ctctaggatgtgctcactgcatggggtgtgcatatttttattcaatacccagagtatgca 60
Query: 66 gtgagaacttgatagagatt 85
||| |||| | |||||||||
Sbjct: 61 gtgtgaacataatagagatt 80
>RF02017;mir-1912;AAQR01354489.1/3067-3146 30611:Otolemur
garnettii (small-eared galago)
Length = 80
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 ctctaggatgtgctcattgcatgggctgtgta 37
||||||||||| ||||||||||||||||||||
Sbjct: 1 ctctaggatgttctcattgcatgggctgtgta 32
