miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00090;SNORA74;AACN010196241.1/1437-1297 9615:Canis lupus
familiaris (dog)
Length = 141
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 gctggttggcattctgggcctggttcatgccacctctgttgttaactataccaggatgtc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 76 gctggttggcattctgggcctggttcatgccacctctgttgttaactataccaggatgcc 135
Query: 61 agcata 66
||||||
Sbjct: 136 agcata 141
>RF00090;SNORA74;AANU01297334.1/945-1149 9544:Macaca mulatta (rhesus
monkey)
Length = 205
Score = 75.8 bits (38), Expect = 6e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gctggttggcattctgggcctggttcatgccacctctgttgttaactataccaggatgtc 60
||||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||| |
Sbjct: 76 gctggttggcattctggccctggttcatgccaactctg-tgttgactaccccaggatgcc 134
Query: 61 agcatagttg 70
||||||||||
Sbjct: 135 agcatagttg 144
>RF00090;SNORA74;ABRT010573609.1/378-519 9478:Tarsius syrichta
(Philippine tarsier)
Length = 142
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 gctggttggcattctgggcctggttcatgccacctctgttgttaactataccaggatgtc 60
|||||||||||||||||| ||||||| ||||| ||||| ||| |||||||||||||| |
Sbjct: 78 gctggttggcattctgggtctggttcgtgccaactctg-tgtcgactataccaggatgcc 136
Query: 61 agcata 66
||||||
Sbjct: 137 agcata 142
>RF00090;SNORA74;CABD01267573.2/416-276 9595:Gorilla gorilla gorilla
(Western lowland gorilla)
Length = 141
Score = 63.9 bits (32), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 1 gctggttggcattctgggcctggttcatgccacctctgttgttaactataccaggatgtc 60
|||| |||||||||||| |||||||||||||| |||| |||| |||| |||||||| |
Sbjct: 76 gctgrttggcattctggccctggttcatgccaactcttgtgttgactaccccaggatgcc 135
Query: 61 agcata 66
||||||
Sbjct: 136 agcata 141
>RF00090;SNORA74;AAPE01288159.1/1294-1417 59463:Myotis lucifugus
(little brown bat)
Length = 124
Score = 52.0 bits (26), Expect = 9e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 1 gctggttggcattctgggcctggttcatgccacctctgttgttaactata 50
||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct: 75 gctggttggcattctgggcctggtttgtgccaagttggttgttaactata 124
>RF00090;SNORA74;AAYZ01434888.1/2189-2052 9978:Ochotona princeps
(American pika)
Length = 138
Score = 44.1 bits (22), Expect = 2e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 gctggttggcattctgggcctggttcatgccacctctgttgttaactataccag 54
|||||| ||||| |||||||||||| |||||| | || |||||||||||||||
Sbjct: 76 gctggtgggcatcctgggcctggttaatgccaaatttg-tgttaactataccag 128
