miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00005;tRNA;AARH01035099.1/426-334 :
Length = 93
Score = 99.6 bits (50), Expect = 9e-21
Identities = 84/94 (89%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 19 gctccagtggcgcaatcggttagcgcgcggtacttatacagcagtatatgtgcgggtgat 78
||||||||||||||||||||||||||| |||||||||| |||||| ||| ||| ||
Sbjct: 1 gctccagtggcgcaatcggttagcgcgtggtacttatatggcagtaactgt-tgggcaat 59
Query: 79 gccgaggttgtgagttcgagcctcacctggagca 112
||||||||||||||||| ||||||||||||||||
Sbjct: 60 gccgaggttgtgagttcaagcctcacctggagca 93
>RF00005;tRNA;AACY021084543.1/688-599 :
Length = 90
Score = 79.8 bits (40), Expect = 8e-15
Identities = 82/94 (87%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 19 gctccagtggcgcaatcggttagcgcgcggtacttatacagcagtatatgtgcgggtgat 78
|||||||||||||||||||||||||| ||||||||||| | ||||| || | | ||
Sbjct: 1 gctccagtggcgcaatcggttagcgcacggtacttataga-cagtacat---agagaaat 56
Query: 79 gccgaggttgtgagttcgagcctcacctggagca 112
|||| |||||||||||||||||||||||||||||
Sbjct: 57 gccggggttgtgagttcgagcctcacctggagca 90
>RF00005;tRNA;AACT01025314.1/1427-1516 :
Length = 90
Score = 77.8 bits (39), Expect = 3e-14
Identities = 82/95 (86%), Gaps = 6/95 (6%)
Strand = Plus / Plus
Query: 19 gctccagtggcgcaatcggttagcgcgcggtacttatacagcagtatatgtgcgg-gtga 77
||||| |||||||||||||||||||||| ||||||||| | |||||| ||| | |
Sbjct: 1 gctcctgtggcgcaatcggttagcgcgccgtacttatataacagtat-----cggagaaa 55
Query: 78 tgccgaggttgtgagttcgagcctcacctggagca 112
||| |||||||||||||||||||||||||||||||
Sbjct: 56 tgcggaggttgtgagttcgagcctcacctggagca 90
>RF00005;tRNA;ABEP02006244.1/7357-7460 :
Length = 104
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 19 gctccagtggcgcaatcggttagcgcgcggtacttatacagcagtata 66
||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gctcctgtggcgcaatcggttagcgcgtcgtacttatacagcagtata 48
>RF00005;tRNA;ABEP02010921.1/8256-8155 :
Length = 102
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 19 gctccagtggcgcaatcggttagcgcgcggtacttatacagcagtata 66
||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gctcctgtggcgcaatcggttagcgcgtcgtacttatacagcagtata 48
>RF00005;tRNA;ACBE01355219.1/3061-3133 :
Length = 73
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 cgaggttgtgagttcgagcctcac 104
||||||||||||||||||||||||
Sbjct: 42 cgaggttgtgagttcgagcctcac 65
>RF00005;tRNA;AAEX02019627.1/4724-4653 :
Length = 72
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 ggttgtgagttcgagcctcacct 106
|||||||||||||||||||||||
Sbjct: 45 ggttgtgagttcgagcctcacct 67
>RF00005;tRNA;AAGD02002770.1/15011-15082 :
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 aggttgtgagttcgagcctcacctggagca 112
|||| |||||||||||||||||| ||||||
Sbjct: 43 aggtcgtgagttcgagcctcaccgggagca 72
>RF00005;tRNA;CAAC02000516.1/605450-605521 :
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 aggttgtgagttcgagcctcacctggagca 112
|||| |||||||||||||||||| ||||||
Sbjct: 43 aggtcgtgagttcgagcctcaccgggagca 72
>RF00005;tRNA;ACBE01316047.1/1382-1454 :
Length = 73
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 aggttgtgagttcgagcctcac 104
||||||||||||||||||||||
Sbjct: 44 aggttgtgagttcgagcctcac 65
>RF00005;tRNA;AACN010014023.1/3706-3778 :
Length = 73
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 aggttgtgagttcgagcctcac 104
||||||||||||||||||||||
Sbjct: 44 aggttgtgagttcgagcctcac 65
>RF00005;tRNA;BX927347.12/15689-15617 :
Length = 73
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 aggttgtgagttcgagcctcac 104
||||||||||||||||||||||
Sbjct: 44 aggttgtgagttcgagcctcac 65
>RF00005;tRNA;AATM01000132.1/6340-6427 :
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 aggttgtgagttcgagcctcacctggagca 112
|||| |||||||||||||||||| ||||||
Sbjct: 59 aggtcgtgagttcgagcctcaccaggagca 88
>RF00005;tRNA;AATM01000160.1/324-411 :
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 aggttgtgagttcgagcctcacctggagca 112
|||| |||||||||||||||||| ||||||
Sbjct: 59 aggtcgtgagttcgagcctcaccaggagca 88
