miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 1 gggctggactcctgttcctgctgaactgagccagtgcactggaatcaactgtttcagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gggctggactcctgttcctgctgaactgagccagtgcactggaatcaactgtttcagctc 34
Query: 61 agtaggcacgggaggcggagccc 83
|||||||||||||||||||||||
Sbjct: 33 agtaggcacgggaggcggagccc 11
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gggctggactcctgttcctgctgaactgagccagtgcactggaatcaactgtttcagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggctggactcctgttcctgctgaactgagccagtgcactggaatcaactgtttcagctc 60
Query: 61 agtaggcacgggaggcggagccc 83
|||||||||||||||||||||||
Sbjct: 61 agtaggcacgggaggcggagccc 83
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 1 gggctggactcctgttcctgctgaactgagccagtgcactggaatcaactgtttcagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gggctggactcctgttcctgctgaactgagccagtgcactggaatcaactgtttcagctc 34
Query: 61 agtaggcacgggaggcggagccc 83
||||||||| |||||||||||||
Sbjct: 33 agtaggcacaggaggcggagccc 11
>28270_ggo-mir-24:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtaggca 68
|||||||||||||||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgtacacaaaccaactgtgtttcagctcagtaggca 13
Query: 69 cgggaggc 76
||||||||
Sbjct: 12 cgggaggc 5
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtaggca 68
|||||||||||||||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgtacacaaaccaactgtgtttcagctcagtaggca 13
Query: 69 cgggaggc 76
||||||||
Sbjct: 12 cgggaggc 5
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtaggca 68
|||||||||||||||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgtacacaaaccaactgtgtttcagctcagtaggca 13
Query: 69 cgggaggc 76
||||||||
Sbjct: 12 cgggaggc 5
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtaggca 68
|||||||||||||||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgtacacaaaccaactgtgtttcagctcagtaggca 13
Query: 69 cgggaggc 76
||||||||
Sbjct: 12 cgggaggc 5
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtaggca 68
|||||||||||||||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgtacacaaaccaactgtgtttcagctcagtaggca 13
Query: 69 cgggaggc 76
||||||||
Sbjct: 12 cgggaggc 5
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtaggca 68
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgtgcacaaatcaactgtgtttcagctcagtaggca 13
Query: 69 cgggaggc 76
||||||||
Sbjct: 12 cgggaggc 5
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 10 tcctgttcctgctgaactgagccagtgcactggaatcaactgt--ttcagctcagtaggc 67
||||||||||||||||||||||||||| | || ||||||| |||||||||||||||
Sbjct: 73 tcctgttcctgctgaactgagccagtgtgcacaaaccaactgtgtttcagctcagtaggc 14
Query: 68 acgggaggc 76
|||||||||
Sbjct: 13 acgggaggc 5
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 10 tcctgttcctgctgaactgagccagtgcactggaatcaactgt--ttcagctcagtaggc 67
||||||||||||||||||||||||||| | || ||||||| |||||||||||||||
Sbjct: 73 tcctgttcctgctgaactgagccagtgtgcacaaaccaactgtgtttcagctcagtaggc 14
Query: 68 acgggaggc 76
|||||||||
Sbjct: 13 acgggaggc 5
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaactgt--ttcagctcagtaggca 68
||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtctgcacaaatcaactgtgtttcagctcagtaggca 13
Query: 69 cgggaggc 76
||||||||
Sbjct: 12 cgggaggc 5
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 gggctggactcctgttcctgctgaactgagccagtg 36
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gggctcgactcctgttcctgctgaactgagccagtg 36
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 gggctggactcctgttcctgctgaactgagccagtg 36
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gggctcgactcctgttcctgctgaactgagccagtg 36
>33024_rno-mir-3074:mirbase
Length = 117
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 gggctggactcctgttcctgctgaactgagccagtg 36
||||| ||||||||||||||||||||||||||||||
Sbjct: 14 gggctcgactcctgttcctgctgaactgagccagtg 49
>26413_tgu-mir-24:mirbase
Length = 132
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 2 ggctggactcctgttcctgctgaactgagccagtg 36
|||| ||||||||||||||||||||||||||||||
Sbjct: 132 ggctcgactcctgttcctgctgaactgagccagtg 98
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 7 gactcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||||
Sbjct: 5 gactcctgttcctgctgaactgagccagtg 34
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 7 gactcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||||
Sbjct: 5 gactcctgttcctgctgaactgagccagtg 34
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 7 gactcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||||
Sbjct: 78 gactcctgttcctgctgaactgagccagtg 49
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 7 gactcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||||
Sbjct: 106 gactcctgttcctgctgaactgagccagtg 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 tcagctcagtaggcacgggaggc 76
|||||||||||||||||||||||
Sbjct: 59 tcagctcagtaggcacgggaggc 37
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 7 gactcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||||
Sbjct: 70 gactcctgttcctgctgaactgagccagtg 41
>26961_eca-mir-24:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtagg 66
||||||||||||||||||||||||||| | || |||| |||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtctgcacaaaccaactgtgtttcagctcagtagg 9
Query: 67 cacgggag 74
||||||||
Sbjct: 8 cacgggag 1
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 7 gactcctgttcctgctgaactgagccagt 35
|||||||||||||||||||||||||||||
Sbjct: 72 gactcctgttcctgctgaactgagccagt 44
>31442_oan-mir-24:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 8 actcctgttcctgctgaactgagccagtg 36
|||||||||||||||||||||||||||||
Sbjct: 77 actcctgttcctgctgaactgagccagtg 49
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 8 actcctgttcctgctgaactgagccagtg 36
|||||||||||||||||||||||||||||
Sbjct: 74 actcctgttcctgctgaactgagccagtg 46
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtg 40
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtg 40
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtg 40
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 8 actcctgttcctgctgaactgagccagt 35
||||||||||||||||||||||||||||
Sbjct: 79 actcctgttcctgctgaactgagccagt 52
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 8 actcctgttcctgctgaactgagccagt 35
||||||||||||||||||||||||||||
Sbjct: 79 actcctgttcctgctgaactgagccagt 52
>25444_pma-mir-24:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 7 gactcctgttcctgctgaactgagccagtgc 37
|||| ||||||||||||||||||||||||||
Sbjct: 84 gacttctgttcctgctgaactgagccagtgc 54
>25908_gga-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 9 ctcctgttcctgctgaactgagccagt 35
|||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtgcactggaatcaac--tgtttcagctcagtaggca 68
||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 62 cctgttcctgctgaactgagccagtctgcacaaatcaactgtgtttcagctcagtaggca 3
Query: 69 cg 70
||
Sbjct: 2 cg 1
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagtg 36
||||||||||||||||||||||||||
Sbjct: 62 cctgttcctgctgaactgagccagtg 37
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccagt 35
|||||||||||||||||||||||||
Sbjct: 73 cctgttcctgctgaactgagccagt 49
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccag 34
||||||||||||||||||||||||
Sbjct: 78 cctgttcctgctgaactgagccag 55
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccag 34
||||||||||||||||||||||||
Sbjct: 73 cctgttcctgctgaactgagccag 50
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 cctgttcctgctgaactgagccag 34
||||||||||||||||||||||||
Sbjct: 73 cctgttcctgctgaactgagccag 50
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 16 tcctgctgaactgagccagtg 36
|||||||||||||||||||||
Sbjct: 57 tcctgctgaactgagccagtg 37
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16 tcctgctgaactgagccag 34
|||||||||||||||||||
Sbjct: 62 tcctgctgaactgagccag 44
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16 tcctgctgaactgagccag 34
|||||||||||||||||||
Sbjct: 62 tcctgctgaactgagccag 44
