miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;ABDC01153832.1/458-741 30608:Microcebus murinus
(gray mouse lemur)
Length = 284
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01404285.1/607-316 30608:Microcebus murinus
(gray mouse lemur)
Length = 292
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01610525.1/37-318 30608:Microcebus murinus
(gray mouse lemur)
Length = 282
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01107325.1/5050-4773 30608:Microcebus
murinus (gray mouse lemur)
Length = 278
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01474612.1/2158-1874 30608:Microcebus
murinus (gray mouse lemur)
Length = 285
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtggctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01503118.1/232-525 30608:Microcebus murinus
(gray mouse lemur)
Length = 294
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01129178.1/627-314 30608:Microcebus murinus
(gray mouse lemur)
Length = 314
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01246921.1/1006-710 30608:Microcebus
murinus (gray mouse lemur)
Length = 297
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01265231.1/4830-4538 30608:Microcebus
murinus (gray mouse lemur)
Length = 293
Score = 54.0 bits (27), Expect = 5e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF01942;mir-1937;AAHY01043322.1/11565-11447 10090:Mus musculus
(house mouse)
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 19 tggctgtcctggcactcactctgtagaccaggct 52
|||||||||||| ||| |||||||||||||||||
Sbjct: 42 tggctgtcctggaacttactctgtagaccaggct 9
>RF01942;mir-1937;CAAA01214895.1/357-468 10090:Mus musculus (house
mouse)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 tctgtagaccaggctggccttgaact 63
||||||||||||||||||||||||||
Sbjct: 4 tctgtagaccaggctggccttgaact 29
>RF00017;Metazoa_SRP;ABDC01119374.1/2123-2382 30608:Microcebus
murinus (gray mouse lemur)
Length = 260
Score = 52.0 bits (26), Expect = 2e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 75 ctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 54 ctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01050430.1/7616-7890 30608:Microcebus
murinus (gray mouse lemur)
Length = 275
Score = 52.0 bits (26), Expect = 2e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 75 ctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 54 ctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01371456.1/3501-3250 30608:Microcebus
murinus (gray mouse lemur)
Length = 252
Score = 52.0 bits (26), Expect = 2e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 75 ctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
||||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 54 ctgcctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;AAQR01005955.1/921-622 30611:Otolemur garnettii
(small-eared galago)
Length = 300
Score = 50.1 bits (25), Expect = 7e-06
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctac 117
|||||||| ||||||| ||| |||||||||| |||||||||||||
Sbjct: 55 cctgcctcagcctccccagtagctgggactataggcatgcgctac 11
>RF00017;Metazoa_SRP;AADB02010026.1/405350-405627 9606:Homo sapiens
(human)
Length = 278
Score = 50.1 bits (25), Expect = 7e-06
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 68 aattcacctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
||||| |||||||| ||||||||||| ||||||| || |||||||||| ||||
Sbjct: 61 aattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01028452.1/1888-1590 30608:Microcebus
murinus (gray mouse lemur)
Length = 299
Score = 48.1 bits (24), Expect = 3e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgc 112
|||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgc 16
>RF00017;Metazoa_SRP;ABDC01277652.1/2350-2057 30608:Microcebus
murinus (gray mouse lemur)
Length = 294
Score = 48.1 bits (24), Expect = 3e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgc 112
|||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatgc 16
>RF00017;Metazoa_SRP;ABGA01177947.1/4883-4585 9601:Pongo abelii
(Sumatran orangutan)
Length = 299
Score = 48.1 bits (24), Expect = 3e-05
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 69 attcacctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||| |||||||| ||||||||||| ||||||| || |||||||||| ||||
Sbjct: 194 attctcctgcctcagcctcccgagtagctgggattacaggcatgcgccacca 143
>RF00017;Metazoa_SRP;ABDC01040800.1/2171-2427 30608:Microcebus
murinus (gray mouse lemur)
Length = 257
Score = 46.1 bits (23), Expect = 1e-04
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| ||||| |||| |||||||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctggaactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABRT011117340.1/823-530 9478:Tarsius syrichta
(Philippine tarsier)
Length = 294
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 77 gcctctgcctcccgagtgctgggactaaaggcatgcgctacca 119
||||| |||||| ||||||||||||| ||||||| |||||||
Sbjct: 51 gcctcagcctcctgagtgctgggactgcaggcatgtgctacca 9
>RF00017;Metazoa_SRP;ABGA01292638.1/11639-11354 9601:Pongo abelii
(Sumatran orangutan)
Length = 286
Score = 46.1 bits (23), Expect = 1e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 68 aattcacctgcctctgcctcccgagt-gctgggactaaaggca 109
||||| |||||||| ||||||||||| |||||||||| |||||
Sbjct: 61 aattctcctgcctcagcctcccgagtagctgggactacaggca 19
>RF00017;Metazoa_SRP;ABGA01236283.1/9895-10196 9601:Pongo abelii
(Sumatran orangutan)
Length = 302
Score = 46.1 bits (23), Expect = 1e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 78 cctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 51 cctcagcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;CABD01774591.1/461-760 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 300
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 72 cacctgcctctgcctcccgagt-gctgggactaaaggca 109
|||||||||| ||||||||||| |||||||||| |||||
Sbjct: 57 cacctgcctcagcctcccgagtagctgggactacaggca 19
>RF00017;Metazoa_SRP;CABD01089117.1/2992-3287 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 296
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 77 gcctctgcctcccgagt-gctgggactaaaggcatgcgc 114
||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 52 gcctcagcctcccgagtagctgggactacaggcatgcgc 14
>RF00017;Metazoa_SRP;AANU01242367.1/4519-4217 9544:Macaca mulatta
(rhesus monkey)
Length = 303
Score = 46.1 bits (23), Expect = 1e-04
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
|||||||| ||||||||||| |||||||||| ||| |||||| ||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggtatgcgccacca 9
>RF00017;Metazoa_SRP;AANU01211750.1/2662-2959 9544:Macaca mulatta
(rhesus monkey)
Length = 298
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatg 111
|||||||| ||||||||||| |||||||||| |||||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcatg 17
>RF00017;Metazoa_SRP;AAKM01002236.1/561-261 5855:Plasmodium vivax
(malaria parasite P. vivax)
Length = 301
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 77 gcctctgcctcccgagt-gctgggactaaaggcatgcgc 114
||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 52 gcctcagcctcccgagtagctgggactacaggcatgcgc 14
>RF00017;Metazoa_SRP;ABRP01262223.1/1655-1956 132908:Pteropus
vampyrus (large flying fox)
Length = 302
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 69 attcacctgcctctgcctcccgagt-gctgggactaaaggca 109
|||| |||||||| ||||||||||| |||||||||| |||||
Sbjct: 60 attctcctgcctcagcctcccgagtagctgggactacaggca 19
>RF00017;Metazoa_SRP;ABDC01077871.1/263-557 30608:Microcebus murinus
(gray mouse lemur)
Length = 295
Score = 44.1 bits (22), Expect = 4e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 76 tgcctctgcctcccgagt-gctgggactaaaggcatgc 112
|||||| ||||||||||| |||||||||| ||||||||
Sbjct: 53 tgcctcagcctcccgagtagctgggactacaggcatgc 16
>RF00017;Metazoa_SRP;ABDC01398661.1/4360-4648 30608:Microcebus
murinus (gray mouse lemur)
Length = 289
Score = 44.1 bits (22), Expect = 4e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 83 gcctcccgagt-gctgggactaaaggcatgcgctacca 119
||||||||||| |||||||||| |||||||||| ||||
Sbjct: 46 gcctcccgagtagctgggactacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABDC01279076.1/222-513 30608:Microcebus murinus
(gray mouse lemur)
Length = 292
Score = 44.1 bits (22), Expect = 4e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 78 cctctgcctcccgagt-gctgggactaaaggcatgcgc 114
|||| ||||||||||| |||||||||| ||||||||||
Sbjct: 51 cctcagcctcccgagtagctgggactacaggcatgcgc 14
>RF00017;Metazoa_SRP;ABGA01227117.1/6140-5862 9601:Pongo abelii
(Sumatran orangutan)
Length = 279
Score = 44.1 bits (22), Expect = 4e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 75 ctgcctctgcctcccgagt-gctgggactaaaggcatgcgctacca 119
||||||| ||||||||||| ||||||| || |||||||||| ||||
Sbjct: 54 ctgcctcagcctcccgagtagctgggattacaggcatgcgccacca 9
>RF00017;Metazoa_SRP;ABGA01374690.1/1563-1864 9601:Pongo abelii
(Sumatran orangutan)
Length = 302
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 68 aattcacctgcctctgcctcccgagt-gctgggactaaaggc 108
||||| |||||||| |||||| |||| |||||||||||||||
Sbjct: 60 aattctcctgcctcagcctcctgagtagctgggactaaaggc 19
>RF00017;Metazoa_SRP;AADD01121916.1/6495-6773 9606:Homo sapiens
(human)
Length = 279
Score = 44.1 bits (22), Expect = 4e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 69 attcacctgcctctgcctcccgagt-gctgggactaaaggcatgcg 113
|||| |||||||| ||||||||||| ||||||| || |||||||||
Sbjct: 191 attctcctgcctcagcctcccgagtagctgggattacaggcatgcg 146
>RF00017;Metazoa_SRP;AANU01245045.1/62948-62652 9544:Macaca mulatta
(rhesus monkey)
Length = 297
Score = 44.1 bits (22), Expect = 4e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcat 110
|||||||| |||||| |||| |||||||||||||||||
Sbjct: 54 cctgcctcagcctcctgagtagctgggactaaaggcat 17
>RF00017;Metazoa_SRP;AAYZ01489721.1/368-667 9978:Ochotona princeps
(American pika)
Length = 300
Score = 44.1 bits (22), Expect = 4e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 78 cctctgcctcccgagt-gctgggactaaaggcatgcgc 114
|||| ||||||||||| |||||||||| ||||||||||
Sbjct: 51 cctcagcctcccgagtagctgggactacaggcatgcgc 14
>RF00017;Metazoa_SRP;AAYZ01098601.1/5632-5341 9978:Ochotona princeps
(American pika)
Length = 292
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 74 cctgcctctgcctcccgagt-gctgggactaaaggcatgcgc 114
|||||||| ||||||||||| |||||||||| |||| |||||
Sbjct: 55 cctgcctcagcctcccgagtagctgggactacaggcgtgcgc 14
