miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00005;tRNA;AAGV020935831.1/1096-1168 :
Length = 73
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgcttc 36
|||||||||||||||| ||||||||||||||
Sbjct: 3 gggtgtagctcagcggtagagcacctgcttc 33
>RF00005;tRNA;CP000896.1/477127-477198 :
Length = 72
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tagctcagcgggagagcacctgctt 35
|||||||||||||||||||||||||
Sbjct: 8 tagctcagcgggagagcacctgctt 32
>RF00005;tRNA;BABD01024301.1/176-248 :
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagc-gggagagcacctgctt 35
||||||||||||||| ||||||||||||||||
Sbjct: 2 ggggtgtagctcagctgggagagcacctgctt 33
>RF00005;tRNA;AAFX01109754.1/85-16 :
Length = 70
Score = 48.1 bits (24), Expect = 1e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagc-gggagagcacctgctt 35
||||||||||||||| ||||||||||||||||
Sbjct: 2 ggggtgtagctcagctgggagagcacctgctt 33
>RF00005;tRNA;AAQQ01330412.1/1122-1048 :
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 tggggtgtagctcagcgggagagcacctgctt 35
||||||||||||||| |||||||||| |||||
Sbjct: 1 tggggtgtagctcagtgggagagcacttgctt 32
>RF00005;tRNA;AABR04011786.1/32914-32985 :
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 tggggtgtagctcagcgggagagcacctgctt 35
|||||||||||||||||| ||||||| |||||
Sbjct: 1 tggggtgtagctcagcggtagagcacttgctt 32
>RF00005;tRNA;AAGV020319882.1/788-859 :
Length = 72
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgcttc 36
||||||||||||| ||| |||||||||||||
Sbjct: 3 gggtgtagctcagtgggtgagcacctgcttc 33
>RF00005;tRNA;AAGV020127556.1/2564-2493 :
Length = 72
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgcttc 36
|||||||||||||||| |||||||||||||
Sbjct: 3 gggtgtagctcagcggttgagcacctgcttc 33
>RF00005;tRNA;ABRR01212258.1/1444-1375 :
Length = 70
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgcttc 36
||||||||||||| |||||||||| ||||||
Sbjct: 1 gggtgtagctcagtgggagagcacatgcttc 31
>RF00005;tRNA;ABRR01281525.1/12437-12366 :
Length = 72
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcacctgctt 35
||||||||||||||||| ||||||| |||||
Sbjct: 2 ggggtgtagctcagcggtagagcacgtgctt 32
>RF00005;tRNA;AABR04119580.1/114-52 :
Length = 63
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tgtagctcagcgggagagcacctgctt 35
|||||||||| ||||||||||||||||
Sbjct: 6 tgtagctcagtgggagagcacctgctt 32
>RF00005;tRNA;AF510889.1/421-490 :
Length = 70
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tgtagctcagcgggagagcacctgctt 35
||||||||||| |||||||||||||||
Sbjct: 6 tgtagctcagctggagagcacctgctt 32
>RF00005;tRNA;CP000232.1/1874425-1874354 :
Length = 72
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagctcagcgggagagcacctgc 33
|||||||||||||||||||||||
Sbjct: 8 tagctcagcgggagagcacctgc 30
>RF00005;tRNA;AAGV020154360.1/1690-1761 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ggtgtagctcagcgggagagcacctgcttc 36
|||||||||||| ||| |||||||||||||
Sbjct: 4 ggtgtagctcagtgggtgagcacctgcttc 33
>RF00005;tRNA;AAGV020952083.1/293-221 :
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ggtgtagctcagcgggagagcacctgcttc 36
||||||||||||||| ||||| ||||||||
Sbjct: 4 ggtgtagctcagcggcagagcgcctgcttc 33
>RF00005;tRNA;ABRR01409596.1/658-584 :
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgctt 35
|||||||||||||||| ||||||| |||||
Sbjct: 3 gggtgtagctcagcggtagagcacgtgctt 32
>RF00005;tRNA;ABRR01263574.1/50-121 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgctt 35
|||| ||||||||||| |||||||||||||
Sbjct: 3 gggtatagctcagcggtagagcacctgctt 32
>RF00005;tRNA;ABRR01097784.1/1214-1285 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgctt 35
|||| ||||||||||| |||||||||||||
Sbjct: 3 gggtatagctcagcggtagagcacctgctt 32
>RF00005;tRNA;ABRR01103452.1/904-974 :
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgctt 35
||||||||||||| || |||||||||||||
Sbjct: 3 gggtgtagctcagtggtagagcacctgctt 32
>RF00005;tRNA;ABRR01056717.1/2587-2518 :
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgctt 35
|||||||||||||||| ||||||| |||||
Sbjct: 3 gggtgtagctcagcggtagagcacatgctt 32
>RF00005;tRNA;ABRR01120312.1/7047-6976 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgctt 35
||||||||||||| |||||||||| |||||
Sbjct: 3 gggtgtagctcagtgggagagcacatgctt 32
>RF00005;tRNA;AAQQ01298791.1/3958-4029 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcacctgct 34
||||||||||||||||| ||||||| ||||
Sbjct: 2 ggggtgtagctcagcggtagagcacttgct 31
>RF00005;tRNA;AAQQ01732138.1/1104-1041 :
Length = 64
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tggggtgtagctcagcgggagagcac 29
||||||||||||||| ||||||||||
Sbjct: 1 tggggtgtagctcagtgggagagcac 26
>RF00005;tRNA;AAQQ01308481.1/1342-1272 :
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tggggtgtagctcagcgggagagcacctgc 33
||||||||||||||| || |||||||||||
Sbjct: 1 tggggtgtagctcagtggtagagcacctgc 30
>RF00005;tRNA;AAGU02136674.1/6207-6275 :
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcacctgcttcat 38
|||||||||||||| || ||||||| ||||||||
Sbjct: 2 ggggtgtagctcagtggtagagcacgtgcttcat 35
>RF00005;tRNA;CP000771.1/935568-935639 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgctt 35
|||||||||||||||| ||||||| |||||
Sbjct: 3 gggtgtagctcagcggtagagcacttgctt 32
>RF00005;tRNA;AATP01000002.1/553854-553925 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtagctcagcgggagagcacct 31
||||||||||||||||||||||
Sbjct: 7 gtagctcagcgggagagcacct 28
>RF00005;tRNA;ABRU01000010.1/160709-160780 :
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtagctcagcgggagagcacct 31
||||||||||||||||||||||
Sbjct: 7 gtagctcagcgggagagcacct 28
>RF00005;tRNA;BAAY01009296.1/785-713 :
Length = 73
Score = 42.1 bits (21), Expect = 7e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 4 tggggtgtagctcagc-gggagagcacctgctt 35
|||||| ||||||||| ||||||||||||||||
Sbjct: 1 tggggtttagctcagctgggagagcacctgctt 33
>RF00005;tRNA;AAGV020161670.1/2767-2696 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgct 34
|||||||||||||||| |||||||||||
Sbjct: 3 gggtgtagctcagcggttgagcacctgct 31
>RF00005;tRNA;AAGV020058849.1/6187-6115 :
Length = 73
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 gtgtagctcagcgggagagcacctgcttc 36
||||||||||| || ||||||||||||||
Sbjct: 6 gtgtagctcagtggtagagcacctgcttc 34
>RF00005;tRNA;AAGV020880992.1/1647-1576 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 4 tggggtgtagctcagcgggagagcacctgcttc 36
||||||||||||||| || |||||||||||||
Sbjct: 1 tggggtgtagctcagtggttgagcacctgcttc 33
>RF00005;tRNA;ABRR01157831.1/782-853 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgct 34
|||||||||||||||| ||||||| ||||
Sbjct: 3 gggtgtagctcagcggtagagcacatgct 31
>RF00005;tRNA;ABRR01421021.1/610-546 :
Length = 65
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 gggtgtagctcagcgggagagcacctgct 34
||||||||||||| || ||||||||||||
Sbjct: 3 gggtgtagctcagtggtagagcacctgct 31
>RF00005;tRNA;AAQQ01315583.1/2930-3001 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcacctgc 33
|||||||||||||| || |||||||||||
Sbjct: 2 ggggtgtagctcagtggtagagcacctgc 30
>RF00005;tRNA;AAQQ01624854.1/4833-4762 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 4 tggggtgtagctcagcgggagagcacctgcttc 36
||||||||||||||| || ||||||| ||||||
Sbjct: 1 tggggtgtagctcagtggtagagcacatgcttc 33
>RF00005;tRNA;AAQQ01137625.1/1747-1818 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcacctgc 33
|||||||||||||| || |||||||||||
Sbjct: 2 ggggtgtagctcaggggcagagcacctgc 30
>RF00005;tRNA;AAQQ01033675.1/1316-1245 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcacctgcttca 37
|||||||||||||| || ||||||| |||||||
Sbjct: 2 ggggtgtagctcagtggtagagcacttgcttca 34
>RF00005;tRNA;AAKN02028649.1/5290-5220 :
Length = 71
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcacctgc 33
|||||||||||||| || |||||||||||
Sbjct: 2 ggggtgtagctcagtggcagagcacctgc 30
>RF00005;tRNA;AAGW01468095.1/176-264 :
Length = 89
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 ggggtgtagctcagcgggagagcac 29
|||||||||||||| ||||||||||
Sbjct: 2 ggggtgtagctcagtgggagagcac 26
>RF00005;tRNA;ABUH01000061.1/9401-9472 :
Length = 72
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 gtagctcagcgggagagcacc 30
|||||||||||||||||||||
Sbjct: 7 gtagctcagcgggagagcacc 27
