miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 11 ccaggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagc 70
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1 ccaggttgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagc 60
Query: 71 ctcctagctttccttg 86
||||||||||||||||
Sbjct: 61 ctcctagctttccttg 76
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 127 bits (64), Expect = 3e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctccta 76
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 66
Query: 77 gctttcct 84
||||||||
Sbjct: 67 gctttcct 74
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 11 ccaggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagc 70
|||||||||||||||||||||||||||||||| | ||| || ||||||||||||||| |
Sbjct: 1 ccaggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaac 60
Query: 71 ctcctagctttcc 83
|||||||||||||
Sbjct: 61 ctcctagctttcc 73
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 12 caggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcc 71
|||| |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||
Sbjct: 2 caggttgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcc 61
Query: 72 tcctagctttcc 83
||||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 12 caggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcc 71
|||| ||||||||||||||||||||||||||| |||| || |||||||| ||||||| ||
Sbjct: 2 cagggtgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacc 61
Query: 72 tcctagctttcc 83
||||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctccta 76
|||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagcctccta 66
Query: 77 gctttcc 83
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 12 caggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcc 71
|||| |||||||||||||||||||||| ||||| || || |||||| |||||||||||
Sbjct: 2 caggttgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcc 61
Query: 72 tcctagctttcc 83
||||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctccta 76
|||||||||||||||||| ||||||| ||||| | ||||| |||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaaccttcta 66
Query: 77 gctttccttg 86
||||||||||
Sbjct: 67 gctttccttg 76
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctccta 76
|||||||||||||||||| ||||||||| ||| | ||||| |||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaaccttcta 66
Query: 77 gctttcctt 85
|||||||||
Sbjct: 67 gctttcctt 75
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaag-ggagataactgtacagcctcct 75
|||||||||||||||||| ||||||| | ||| || ||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctcct 66
Query: 76 agctttcc 83
||||||||
Sbjct: 67 agctttcc 74
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctccta 76
|||||||||||||||||||||| ||| ||||| | |||||||||||||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 77 gctttcc 83
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 11 ccaggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagc 70
||||| ||||||||| |||||||||||| ||| | ||| | ||||||| |||||||| |
Sbjct: 1 ccaggatgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaac 60
Query: 71 ctcctagcttt 81
|||||||||||
Sbjct: 61 ctcctagcttt 71
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctccta 76
|||||||||||||||||||||| ||| |||| || |||||||||||| || ||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgcta 66
Query: 77 gctttccttgg 87
||| |||||||
Sbjct: 67 gctctccttgg 77
>RF00027;let-7;AAPE01049369.1/870-945 59463:Myotis lucifugus
(little brown bat)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 ccaggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagc 70
||||| ||||||||| |||| |||||||||| | ||| || ||||| ||||||||||||
Sbjct: 1 ccaggttgaggtagtcagttggatagtttagaatgacatca-gggaggtaactgtacagc 59
Query: 71 ctcctagct 79
|||||||||
Sbjct: 60 ctcctagct 68
>RF00027;let-7;AAGJ02034255.1/6675-6598 7668:Strongylocentrotus
purpuratus
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttaca-acaagggagataactgtacagcctcct 75
|||||||||||||| |||||||| ||| |||| ||| || |||| || |||||||| ||
Sbjct: 7 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 66
Query: 76 agctttccttgg 87
||||||||||||
Sbjct: 67 agctttccttgg 78
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 56.0 bits (28), Expect = 8e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttagagttacaacaagggagataactgtaca 68
|||||||||||||||||||||| ||| ||||||| |||||| ||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagaagtacaacattggagatgactgtaca 58
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttaga 42
||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttaga 42
||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttaga 42
||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 ccaggctgaggtagtaggttgtatagttt 39
||||| |||||||||||||||||||||||
Sbjct: 1 ccagggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 gctgaggtagtaggttgtatagtt 38
||||||||||||||||||||||||
Sbjct: 5 gctgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 gctgaggtagtaggttgtatagtt 38
||||||||||||||||||||||||
Sbjct: 4 gctgaggtagtaggttgtatagtt 27
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 caggctgaggtagtaggttgtatagttt 39
|||| |||||||||||||||||||||||
Sbjct: 2 cagggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 ctgaggtagtaggttgtatagtt 38
|||||||||||||||||||||||
Sbjct: 6 ctgaggtagtaggttgtatagtt 28
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 ggagataactgtacagcctcctagctttcc 83
||||||||||||||| ||| ||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttcc 76
