miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 139 bits (70), Expect = 6e-33
Identities = 83/86 (96%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gcggggtgaggtagtaggttgtgtggtttcaggg-cagtgatgtcgcccctccgaagata 59
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct: 1 gcggggtgaggtagtaggttgtgtggtttcaggggcagtgatgttgcccctcagaagata 60
Query: 60 actatacaacctactgccttccctga 85
||||||||||||||||||||||||||
Sbjct: 61 actatacaacctactgccttccctga 86
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 121 bits (61), Expect = 1e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 2 cggggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgcccctccgaagataac 61
|||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||
Sbjct: 2 cggggtgaggtagtaggttgtgtggtttcagggcagcggtgtcgcccctcagcagataac 61
Query: 62 tatacaacctactgccttccc 82
|||||| ||||||||||||||
Sbjct: 62 tatacagcctactgccttccc 82
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 101 bits (51), Expect = 1e-21
Identities = 78/86 (90%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 gcggggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgcccc--tccgaagat 58
||||| |||||||||||||||||||||||||||| |||||| | ||||| || ||||||
Sbjct: 1 gcgggatgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagat 60
Query: 59 aactatacaacctactgccttccctg 84
||||||||| ||||||||||||||||
Sbjct: 61 aactatacagcctactgccttccctg 86
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 93.7 bits (47), Expect = 3e-19
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gcggggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgcccctccgaagataa 60
|||||||||||||||||||| |||||||||||||||||||||| ||||||| | | ||||
Sbjct: 1 gcggggtgaggtagtaggtt-tgtggtttcagggcagtgatgttgcccctcagcaaataa 59
Query: 61 ctatacaacctactgcctt 79
||| |||||||||| ||||
Sbjct: 60 ctacacaacctacttcctt 78
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 93.7 bits (47), Expect = 3e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 4 gggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgccc-ctccgaagataact 62
||||||||||||||||||||||||||| ||| |||||| | |||| || ||||||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcggggtagtgattttgcccgatcagaagataact 63
Query: 63 atacaacctactgccttccctga 85
||||||| |||||||||||||||
Sbjct: 64 atacaacatactgccttccctga 86
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/79 (89%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 5 ggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgcccc--tccgaagataact 62
|||||||||||||||||||||||||||||| ||| || | ||||| || | ||||||||
Sbjct: 5 ggtgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataact 64
Query: 63 atacaacctactgccttcc 81
|||||||||||||||||||
Sbjct: 65 atacaacctactgccttcc 83
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 83.8 bits (42), Expect = 3e-16
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 6 gtgaggtagtaggttgtgtggtttcagggcagtgatgtc-gcccc-tccgaagataacta 63
||||||||||||||||||| ||||||||| |||||| | ||||| || | |||||||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataacta 65
Query: 64 tacaacctactgccttccctga 85
||||||||||||||||||||||
Sbjct: 66 tacaacctactgccttccctga 87
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 75.8 bits (38), Expect = 8e-14
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 gggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgcccc-tccgaagataact 62
||||||||||||||||||||||||||||||| ||||| | |||| | | || |||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggttgtgattttaccccataaggagctaact 63
Query: 63 atacaacctactgccttccctg 84
||||||||||||||||||||||
Sbjct: 64 atacaacctactgccttccctg 85
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 gaagataactatacaacctactgccttccctga 85
|||||||||||||||| ||| ||||||||||||
Sbjct: 55 gaagataactatacaatctattgccttccctga 87
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgtgtggtttcagggcagtgatgtcgcccctccgaagataactataca 67
|||||||||||||| | |||| ||||||| ||| | ||||| | |||||||||||||
Sbjct: 8 gaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactataca 67
Query: 68 acctactgccttccctg 84
|||| ||||||| ||||
Sbjct: 68 acctgctgcctttcctg 84
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 50 tccgaagataactatacaacctactgccttccctga 85
|||| |||||||||||||| ||| ||||||||||||
Sbjct: 53 tccggagataactatacaatctattgccttccctga 88
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 53 gaagataactatacaacctactgccttccctg 84
|||||||||||||||||||||| | |||||||
Sbjct: 57 gaagataactatacaacctactactttccctg 88
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 53 gaagataactatacaacctactgccttccctg 84
|||||||||||||||||||||| | |||||||
Sbjct: 57 gaagataactatacaacctactactttccctg 88
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 55 agataactatacaacctactgccttccctga 85
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 agataactatacaacctactgccttcc 81
||||||||||||||| |||||||||||
Sbjct: 58 agataactatacaacttactgccttcc 84
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 agataactatacaacctactgccttcc 81
||||||||||||||| |||||||||||
Sbjct: 61 agataactatacaacttactgccttcc 87
