miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/12681-12597 9031:Gallus gallus
(chicken)
Length = 85
Score = 129 bits (65), Expect = 7e-30
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 8 ctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaa 67
||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct: 1 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 60
Query: 68 ctatacgacctgctgcctttcttag 92
|||||| ||||||||||||||||||
Sbjct: 61 ctatacaacctgctgcctttcttag 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 14 agaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaactatac 73
||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||
Sbjct: 7 agaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactatac 66
Query: 74 gacctgctgcctttc 88
||||||||||||||
Sbjct: 67 aacctgctgcctttc 81
>RF00027;let-7;ABRT010188166.1/5185-5269 9478:Tarsius syrichta
(Philippine tarsier)
Length = 85
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 16 aggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaactatacga 75
|||| |||||||||||||||||||||||| | ||||| |||| ||||| || ||||| ||
Sbjct: 9 aggttgtaggttgcatagttttagggcagcggttttgtccactaggaggtacctatatga 68
Query: 76 cctgctgcctttc 88
|||||||||||||
Sbjct: 69 cctgctgcctttc 81
>RF00027;let-7;ABDC01518424.1/1820-1902 30608:Microcebus murinus
(gray mouse lemur)
Length = 83
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 22 taggttgcatagttttagggcagagattttgcccacaaggagttaactatacgacctgct 81
|||||| | |||||| ||||||||||||||| ||| |||| |||||||||| |||||||
Sbjct: 15 taggttacgtagtttcagggcagagattttgtccataagg--ttaactatacaacctgct 72
Query: 82 gcctttcttag 92
|||||||||||
Sbjct: 73 gcctttcttag 83
>RF00027;let-7;AANU01121567.1/12811-12727 9544:Macaca mulatta
(rhesus monkey)
Length = 85
Score = 65.9 bits (33), Expect = 9e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 16 aggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaactatacga 75
|||||||||||||| |||||| ||| ||| |||||| |||||||||| ||| |||| ||
Sbjct: 9 aggtagtaggttgcctagtttgaggacagggattttatccacaaggaggtaattatatga 68
Query: 76 cctgctgcc 84
|||||||||
Sbjct: 69 cctgctgcc 77
>RF00027;let-7;AAGW01052945.1/1566-1484 9986:Oryctolagus cuniculus
(rabbit)
Length = 83
Score = 65.9 bits (33), Expect = 9e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 38 agggcagagattttgcccacaaggagttaactatacgacctgctgcctttctt 90
|||||||||||||||| |||||| || ||||| |||||||||| |||||||||
Sbjct: 29 agggcagagattttgctcacaagaaggtaactctacgacctgcagcctttctt 81
>RF00027;let-7;ABGA01101244.1/3837-3924 9601:Pongo abelii
(Sumatran orangutan)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 16 aggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaactatacga 75
||||||||||||||||||||| ||| ||| |||||| |||| ||||| ||| |||| ||
Sbjct: 9 aggtagtaggttgcatagtttgaggacagggattttatccactaggagataattatatga 68
Query: 76 cctgc 80
|||||
Sbjct: 69 cctgc 73
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AL162595.17/20369-20285 9606:Homo sapiens (human)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 8 ctaggaagaggtagtaggttgcatagttttagggcagagattttgcccac 57
||||||||||| | |||||||||||||| ||||||| ||||| |||||
Sbjct: 1 ctaggaagaggcaacaggttgcatagtttgagggcaggcatttttcccac 50
