miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 6 actcagagcacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaag 65
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 actcagagtacatacttctttatgtacccatatgaacatacaaggctatggaatgtaaag 60
Query: 66 aagtgtgtattttgg 80
|||| ||||||||||
Sbjct: 61 aagtatgtattttgg 75
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 113 bits (57), Expect = 4e-25
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 10 agagcacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagt 69
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agagtacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagt 64
Query: 70 gtgta 74
||||
Sbjct: 65 atgta 69
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 113 bits (57), Expect = 4e-25
Identities = 70/73 (95%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 actcagagcacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaag 65
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 actcagagtacatacttctttatgtacccatatgaacata-aatgctatggaatgtaaag 59
Query: 66 aagtgtgtatttt 78
|||| ||||||||
Sbjct: 60 aagtatgtatttt 72
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 111 bits (56), Expect = 1e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 15 acatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtgtgta 74
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69
Query: 75 tttt 78
||||
Sbjct: 70 tttt 73
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 105 bits (53), Expect = 9e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 10 agagcacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagt 69
|||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 5 agagcacatacttctttatgtacccatatgaagatacaatgttatggaatgtaaagaagt 64
Query: 70 gtgtatttt 78
||||||||
Sbjct: 65 atgtatttt 73
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 85.7 bits (43), Expect = 8e-17
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 acatacttctttatgtacccatatgaacata-gaatgctatggaatgtaaagaagtgtgt 73
||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||
Sbjct: 10 acatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtatgt 69
Query: 74 att 76
|||
Sbjct: 70 att 72
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 73.8 bits (37), Expect = 3e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 14 cacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtgtgt 73
||||||||||||||| ||||||||||||| || | |||||||||||||||||||| |||
Sbjct: 9 cacatacttctttatatacccatatgaactta-acagctatggaatgtaaagaagtatgt 67
Query: 74 atttt 78
|||||
Sbjct: 68 atttt 72
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 acatacttctttatgtacccatatgaacata-gaatgctatggaatgtaaagaagtgtgt 73
||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||
Sbjct: 10 acatacttctttatgtacccatatggacatatgataactatggaatgtaaagaagtatgt 69
Query: 74 att 76
|||
Sbjct: 70 att 72
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtgtgt 73
||||||||||||||| | ||||||||||| | | |||||||||||||||||||| |||
Sbjct: 9 cacatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgt 68
Query: 74 attt 77
||||
Sbjct: 69 attt 72
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 15 acatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtgtgta 74
|||||||||||||| | ||||||||||| | | | ||||||||||||||||||| ||||
Sbjct: 10 acatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgta 69
Query: 75 ttt 77
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;AAQR01319106.1/4854-4930 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 50/54 (92%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 5 tactcagagcacatacttctttatgtacccatatg-aacatagaatgctatgga 57
||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||
Sbjct: 1 tactcagag-acatacttcgttatgtacccatatgaaacatacaatgctatgga 53
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 tgctatggaatgtaaagaagtgtgtatttt 78
||||||||||||||||||||| ||||||||
Sbjct: 43 tgctatggaatgtaaagaagtatgtatttt 72
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 ctatggaatgtaaagaagtgtgtatt 76
||||||||||||||||||| ||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 gctatggaatgtaaagaagtgtgtat 75
|||||||||||||||||||| |||||
Sbjct: 44 gctatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 gctatggaatgtaaagaagtgtgtat 75
|||||||||||||||||||| |||||
Sbjct: 45 gctatggaatgtaaagaagtatgtat 70
