miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 2 tcaggataatgtcaaagtgcttacagtgcaggtagtggtgtgtgcatctactgcagtgaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaggataatgtcaaagtgcttacagtgcaggtagtggtgtgtgcatctactgcagtgaa 60
Query: 62 ggcacttgtggcattgtgctga 83
||||||||||||||||||||||
Sbjct: 61 ggcacttgtggcattgtgctga 82
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 75.8 bits (38), Expect = 8e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 8 taatgtcaaagtgcttacagtgcaggtagtggtgtgt-gcatctactgcagtgaaggcac 66
||||||||||||||||||||||||||||||| | | | | | ||||||||||||||||||
Sbjct: 7 taatgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcac 66
Query: 67 ttgtggcatt 76
|||| |||||
Sbjct: 67 ttgtagcatt 76
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 8 taatgtcaaagtgcttacagtgcaggtagtggtgtgtgcatctactgcagtgaaggcact 67
|||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct: 7 taatgtcaaagtgcttacagtgcaggtagt-gtcttaaaatctactgcagtgaaggcact 65
Query: 68 t 68
|
Sbjct: 66 t 66
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 60.0 bits (30), Expect = 5e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtggtgtgtgcatctactgcagtgaaggcactt 68
||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt-ttgatgacatctactgcagtgaaggcactt 66
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 60.0 bits (30), Expect = 5e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtggtgtgtgcatctactgcagtgaaggcactt 68
||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagttttctaaaaatctactgcagtgaaggcactt 67
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAWZ01041387.1/1182-1261 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtggtgtgtgcatctactgcagtgaaggcactt 68
|||||||||| |||||||||||| |||| ||||||||||||||| |||||||
Sbjct: 14 aaagtgcttatagtgcaggtagt-gtgttggcatctactgcagtgttggcactt 66
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atgtcaaagtgcttacagtgcaggtagt 37
|||| |||||||||||||||||||||||
Sbjct: 9 atgtaaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtg 38
||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagt 37
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtg 38
||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtg 38
||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AAPN01282049.1/1442-1526 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 atctactgcagtgaaggcacttgtggcatt 76
|||| ||||||||||||||||||| |||||
Sbjct: 49 atctgctgcagtgaaggcacttgtagcatt 78
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
