miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;ABRO01215612.1/2433-2512 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 95.6 bits (48), Expect = 9e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 cttctgtagcactaaagtgcttatagtgcaggtagtgtgtcgtcatctactgcattacga 63
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct: 1 cttctgtagcactaaagtgcttatagtgca-gtagtgtccagttatctactgcattacga 59
Query: 64 gcacttacagtactgc 79
||||||| ||||||||
Sbjct: 60 gcacttaaagtactgc 75
>RF00051;mir-17;CR390304.1/91-171 9031:Gallus gallus (chicken)
Length = 81
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 8 tgtagcactaaagtgcttatagtgcaggtagtgtgtcgtcatctactgcattacgagcac 67
|||||||||||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct: 5 tgtagcactaaagtgcttatagtgcaggtagtgttcactaatctactgcattataagcac 64
Query: 68 ttacagtactgccagct 84
||| |||||||| ||||
Sbjct: 65 ttaaagtactgctagct 81
>RF00051;mir-17;AAPN01282049.1/1987-2067 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 75.8 bits (38), Expect = 8e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 8 tgtagcactaaagtgcttatagtgcaggtagtgtgtcgtcatctactgcattacgagcac 67
|||||||||||||||||||||||||||| | ||| | ||| |||||||||||| ||||||
Sbjct: 5 tgtagcactaaagtgcttatagtgcaggcaatgtttagtcgtctactgcattatgagcac 64
Query: 68 tt 69
||
Sbjct: 65 tt 66
>RF00051;mir-17;AAWZ01041387.1/1182-1261 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 65.9 bits (33), Expect = 8e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagtgtgtcgtcatctactgca 57
||||||||||||||||||||||||||| | |||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagtgtgttggcatctactgca 54
>RF00051;mir-17;CAAE01014581.1/3627532-3627453 99883:Tetraodon
nigroviridis
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 actaaagtgcttatagtgcaggtagtgt 41
||||||||||||||||||||||||||||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgt 38
>RF00051;mir-17;AANH01000396.1/151070-150987 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 actaaagtgcttatagtgcaggtagtgt 41
||||||||||||||||||||||||||||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgt 38
>RF00051;mir-17;BAAF04006740.1/10036-9953 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 actaaagtgcttatagtgcaggtagtgt 41
||||||||||||||||||||||||||||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgt 38
>RF00051;mir-17;CAAK05051440.1/15885-15799 7955:Danio rerio
(zebrafish)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taaagtgcttatagtgcaggtagt 39
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;CAAB01000095.1/4903-4823 31033:Takifugu rubripes
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taaagtgcttatagtgcaggtagt 39
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;ABPJ01018453.1/475-563 35575:Mchenga conophoros
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taaagtgcttatagtgcaggtagt 39
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;BAAE01210639.1/1988-1907 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taaagtgcttatagtgcaggtagt 39
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;AAFR03056382.1/1545-1623 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtag 38
||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtag 35
