miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AABR04092601.1/7810-7728 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagca 65
Query: 61 cttctggtactc 72
||||||||||||
Sbjct: 66 cttctggtactc 77
>RF00051;mir-17;BX571778.7/42610-42528 10090:Mus musculus (house
mouse)
Length = 83
Score = 95.6 bits (48), Expect = 7e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagca 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 6 gtagtgccaaagtgctcatagtgcaggtagtttttataccactctactgcagtgtgagca 65
Query: 61 cttctggtactc 72
||||| ||||||
Sbjct: 66 cttctagtactc 77
>RF00051;mir-17;AAGW01169230.1/2042-2124 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 2 tagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcac 61
|||| |||||||||||||||||||||||| | | || || ||||||| |||||||||||
Sbjct: 7 tagtaccaaagtgctcatagtgcaggtagttctagcatcattctactgtagtgtgagcac 66
Query: 62 ttctggtactc 72
|||| ||||||
Sbjct: 67 ttctagtactc 77
>RF00051;mir-17;FP015951.3/28915-28833 9823:Sus scrofa (pig)
Length = 83
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 64
|||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtaggttttgcattactctactgtagtgtgggcacttc 69
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtaggtttt 35
|||||||||||||||||||||||||||||| ||||
Sbjct: 6 gtagtgccaaagtgctcatagtgcaggtagttttt 40
>RF00051;mir-17;ABRQ01318667.1/1268-1186 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagca 60
||||| |||||||||||||||||||||||| || || |||||||||||||| | |||
Sbjct: 6 gtagtaccaaagtgctcatagtgcaggtagtttgggcattactctactgcagtgcgggca 65
Query: 61 cttctggtactc 72
||| | ||||||
Sbjct: 66 cttttagtactc 77
>RF00051;mir-17;AY866359.1/938-1020 9593:Gorilla gorilla (Western
Gorilla)
Length = 83
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtag 30
||||| ||||||||||||||||||||||||
Sbjct: 6 gtagtaccaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggtttt 35
|||||||||||||||||||||||| ||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagttttt 40
>RF00051;mir-17;AAIY01238597.1/3382-3300 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggtttt 35
|||||||||||||||||||||||| ||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagttttt 40
>RF00051;mir-17;CAAB01000095.1/4903-4823 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 43 tctactgcagtgtgagcacttctggtact 71
||||||||||||||||||||||| |||||
Sbjct: 46 tctactgcagtgtgagcacttctagtact 74
>RF00051;mir-17;AAWZ01041388.1/821-905 28377:Anolis carolinensis
(green anole)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 agtgccaaagtgctcatagtgcaggtag 30
|||| |||||||||||||||||||||||
Sbjct: 8 agtgtcaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/150-68 9031:Gallus gallus (chicken)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 caaagtgctcatagtgcaggtag 30
|||||||||||||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtag 35
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 tctactgcagtgtgagcacttct 65
|||||||||||||||||||||||
Sbjct: 48 tctactgcagtgtgagcacttct 70
>RF00051;mir-17;ABRO01259691.1/1321-1238 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtag 30
||||| ||||||||||||||||||| ||||
Sbjct: 6 gtagtaccaaagtgctcatagtgcacgtag 35
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 ctactgcagtgtgagcacttct 65
||||||||||||||||||||||
Sbjct: 51 ctactgcagtgtgagcacttct 72
>RF00051;mir-17;AANH01005996.1/21109-21189 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagg 31
|||||||||||| ||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtagg 36
>RF00051;mir-17;BAAE01210639.1/1988-1907 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 tctactgcagtgtgagcactt 63
|||||||||||||||||||||
Sbjct: 47 tctactgcagtgtgagcactt 67
