miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00178;mir-24;ABRQ01065900.1/2864-2931 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 ctcctgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcagg 77
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct: 1 ctcctgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcagg 60
Query: 78 aacaggag 85
||||||||
Sbjct: 61 aacaggag 68
>RF00178;mir-24;AAVX01198958.1/114-181 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 65.9 bits (33), Expect = 1e-10
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 23 ctgtgcctactgagctga-aacagttgat-tccagtgcactggctcagttcagcaggaac 80
|||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct: 4 ctgtgcctactgagctgataacagttgatattgtttgcactggctcagttcagcaggaac 63
Query: 81 aggag 85
|||||
Sbjct: 64 aggag 68
>RF00178;mir-24;ABRO01400204.1/704-771 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 68
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 20 ctcctgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcagg 77
|||| |||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctgaaacacagttggtttgatcgcactggctcagttcagcagg 60
Query: 78 aacagg 83
||||||
Sbjct: 61 aacagg 66
>RF00178;mir-24;AAKN02038501.1/43560-43494 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>RF00178;mir-24;CR847548.8/141549-141614 7955:Danio rerio
(zebrafish)
Length = 66
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 39 cactggctcagttcagcaggaacaggag 66
>RF00178;mir-24;CT027840.6/8959-9024 7955:Danio rerio (zebrafish)
Length = 66
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 39 cactggctcagttcagcaggaacaggag 66
>RF00178;mir-24;CAAB01008725.1/106-172 31033:Takifugu rubripes
Length = 67
Score = 56.0 bits (28), Expect = 1e-07
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 20 ctcctgtgcctactgagctgaaa-cagttg-attccagtgcactggctcagttcagcagg 77
||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||
Sbjct: 1 ctcctgtgcctactgagctgaaaacagttggatgtcaga-cactggctcagttcagcagg 59
Query: 78 aacaggag 85
||| ||||
Sbjct: 60 aaccggag 67
>RF00178;mir-24;BAAF04040483.1/10387-10453 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>RF00178;mir-24;AAWZ01000886.1/15313-15246 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggag 85
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>RF00178;mir-24;AADN02067827.1/6632-6699 9031:Gallus gallus
(chicken)
Length = 68
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggag 85
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>RF00178;mir-24;BAAF04082680.1/2546-2479 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggag 85
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>RF00178;mir-24;AAPY01721327.1/524-457 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacagga 84
||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagga 67
>RF00178;mir-24;CU138547.13/98214-98280 7955:Danio rerio
(zebrafish)
Length = 67
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacagg 83
|||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacagg 65
>RF00178;mir-24;CU855875.13/13048-13115 7955:Danio rerio
(zebrafish)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctggctcagttcagcaggaacagg 83
||||||||||||||||||||||||
Sbjct: 43 ctggctcagttcagcaggaacagg 66
>RF00178;mir-24;AANH01005378.1/80152-80082 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||| ||||
Sbjct: 44 cactggctcagttcagcaggaaccggag 71
>RF00178;mir-24;BAAE01102385.1/1423-1489 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctggctcagttcagcaggaacagg 83
||||||||||||||||||||||||
Sbjct: 42 ctggctcagttcagcaggaacagg 65
>RF00178;mir-24;AANN01357153.1/1098-1031 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggag 85
|||||||||||||||||||||| ||||
Sbjct: 42 actggctcagttcagcaggaaccggag 68
>RF00178;mir-24;BAAF04038250.1/1131-1201 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggag 85
|||||||||||||||||||||| ||||
Sbjct: 45 actggctcagttcagcaggaaccggag 71
